Francis P P - OmicsDI

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Unknown (4194)
Proteomics (189)
Transcriptomics (165)
Genomics (62)
Metabolomics (49)
Genomic (6)
Models (3)
Multiomics (1)

Organisms

Homo sapiens (205)
Mus musculus (77)
Rattus norvegicus (15)
Saccharomyces cerevisiae (10)
Apis mellifera (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Campylobacter jejuni (3)
Populus trichocarpa (3)
Salmo salar (3)
Melampsora laricis-populina (2)
Populus tremula x Populus alba (2)
Poeciliopsis gracilis (1)
Piloderma croceum (1)
Suillus luteus (1)
Hebeloma cylindrosporum (1)
marine sediment metagenome (1)
Secale cereale x Triticum turgidum subsp. durum (1)
Corylus avellana (1)
Nostoc punctiforme PCC 73102 (1)
Heterobasidion annosum (1)
Pseudomonas fluorescens BBc6R8 (1)
Agaricus bisporus var. bisporus H97 (1)
Laccaria bicolor (1)
Heterobasidion irregulare (1)
Serpula lacrymans var. lacrymans S7.9 (1)
Tuber melanosporum (1)
Candidatus Pelagibacter ubique HTCC1062 (1)
Laccaria bicolor S238N-H82 (1)
Mustela putorius furo (1)
Populus deltoides (1)

Organisms

Mus musculus (4)
Homo sapiens (2)
Plasmodium falciparum (1)

Repository

biostudies-arrayexpress (171)
pride (171)
MetaboLights (49)
EGA (47)
MassIVE (16)
ENA (9)
dbGaP (6)
jPOST (2)
PMR (2)
BioModels (1)

Tissue

Cell culture (25)
Brain (10)
Blood (9)
Epithelial cell (9)
HeLa cell (9)
Fibroblast (7)
Blood plasma (6)
Erythrocyte (6)
Blood cell (5)
Permanent cell line cell (5)
B cell (4)
Lung (4)
Whole body (4)
Liver (3)
Stem cell (3)
Breast epithelium (2)
Cell line cell (2)
Dendritic cell (2)
HEK-293T cell (2)
Heart (2)
Macrophage (2)
Myoblast cell line (2)
Ovary (2)
Saliva (2)
Adipocyte cell line (1)
Astrocyte (1)
Bile (1)
Bone marrow (1)
H9c2 cell (1)
MEF cell (1)

Disease

Plasmodium falciparum malaria (10)
Listeriosis (5)
Malaria (4)
Breast cancer (3)
Neuroblastoma (3)
Alzheimer's disease (2)
COVID-19 (2)
Lymphoma (2)
Moyamoya disease (2)
Non-small cell lung carcinoma (2)
Noonan syndrome (2)
Plasmodium malariae malaria (2)
Tauopathy (1)
Extra-adrenal sympathetic paraganglioma (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Wilms' tumor (1)
Acute enteritis (1)
Amyotrophic lateral sclerosis (1)
Brain cancer (1)
Colon cancer (1)
Developmental and epileptic encephalopathy 9 (1)
Disease free (1)
Down syndrome (1)
Frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (1)
Influenza (1)
Leigh disease (1)
Leukemia (1)
Lewy body dementia (1)
Monkeypox (1)
Neurilemmomatosis (1)

Technology Type

Mass Spectrometry (171)
Shotgun proteomics (79)
Mass spectrometry (44)
Affinity purification coupled with mass spectrometry proteomics (43)
Bottom-up proteomics (29)
Data-dependent acquisition (16)
Data-independent acquisition (16)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
Gel-based experiment (7)
SWATH MS (7)
Mass spectrometry assay (4)
NMR spectroscopy (4)
Top-down proteomics (2)
Affinity proteomics (1)
DiaPASEF (1)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - reverse phase (14)
Illumina NovaSeq 6000 (9)
N/A (8)
Illumina HiSeq 4000 (7)
Maxwell RSC Instrument (6)
Agilent High resolution C scanner (4)
Q Exactive (4)
Liquid Chromatography MS - positive - hilic (4)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina NovaSeq X (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion ETD (2)
TripleTOF 5600 (2)
Bruker (2)
Exactive (Thermo Scientific) (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Gas Chromatography MS - positive (2)
LECO Pegasus 4D (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
10x 3’ single-cell mRNA v3 kit (10x Genomics) (1)
Maxwell RSC instrument (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)

Publication Date

2026 (38)
2012 (36)
2025 (34)
2024 (31)
2021 (29)
2010 (28)
2014 (23)
2022 (22)
2020 (22)
2011 (22)
2023 (21)
2015 (17)
2019 (16)
2013 (15)
2018 (15)
2017 (15)
2016 (10)
2008 (5)
2007 (5)
2009 (2)

UNIPROT ID/AC

O95816 (1)
P10636 (1)
P11142 (1)
Q16543 (1)
Q71U36 (1)
Q9UNE7 (1)

CHEBI ID

CHEBI:30769 (21)
CHEBI:16704 (17)
CHEBI:17568 (17)
CHEBI:27897 (16)
CHEBI:27266 (15)
CHEBI:28044 (15)
CHEBI:15741 (14)
CHEBI:16335 (14)
CHEBI:16449 (14)
CHEBI:17596 (14)
CHEBI:15428 (13)
CHEBI:15756 (13)
CHEBI:15891 (13)
CHEBI:17368 (13)
CHEBI:25017 (13)
CHEBI:28842 (13)
CHEBI:16865 (12)
CHEBI:17964 (12)
CHEBI:17992 (12)
CHEBI:18186 (12)
CHEBI:24898 (12)
CHEBI:28300 (12)
CHEBI:6650 (12)
CHEBI:15354 (11)
CHEBI:15603 (11)
CHEBI:16010 (11)
CHEBI:16196 (11)
CHEBI:16467 (11)
CHEBI:15422 (1)
CHEBI:16761 (1)

Metabolite Name

Uracil (13)
Hypoxanthine (11)
Creatine (10)
Inosine (10)
Adenosine (9)
Creatinine (9)
L-Arginine (9)
Sucrose (9)
Valine (9)
Choline (8)
Citric acid (8)
Glutamine (8)
Glycine (8)
L-Leucine (8)
L-Proline (8)
L-Tyrosine (8)
Phenylalanine (8)
Taurine (8)
Tryptophan (8)
Uric acid (8)
Uridine (8)
Xanthine (8)
5'-Methylthioadenosine (7)
Isoleucine (7)
L-Glutamine (7)
L-Isoleucine (7)
L-Lysine (7)
L-Phenylalanine (7)
L-Valine (7)
Leucine (7)

First Public Date

2020 (3)
2025 (2)
2018 (2)
2026 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (11)
The Francis Crick Institute (7)
Imperial College London (5)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Crick-GSK LinkLabs, UK (3)
Head of Proteomics The Francis Crick Institute 1 Midland Road London NW1 1AT U.K. (3)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium (3)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 82 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
GSK Chair in Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Bio https://myricxbio.com/ Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (2)
Head of the Crick Mass Spectrometry Proteomics Platform (2)
Institut Pasteur (2)
Institut Pasteur Unité des Interactions Bactéries-Cellules, Inserm U604, INRA USC2020 25 rue du Dr. Roux 75015 Paris France (2)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany (2)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute (2)
Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London NW1 1AT, UK (2)
The University of Melbourne (2)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (2)
VIB-UGent Center for Medical Biotechnology, Ghent, Belgium (2)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium. Department of Biomolecular Medicine, Ghent University, Ghent, Belgium. (2)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium. 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom (1)
Alzheimer’s Research UK UCL Drug Discovery Institute, University College London, Cruciform Building, Gower Street, London, WC1E 6BT, U.K. (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Boston University (1)
Bram Snijders Head of Mass Spectrometry Proteomics Platform The Francis Crick Institute 1 Midland Road London NW1 1AT T: +442037962038 E: bram.snijders@crick.ac.uk W: https://crims.crick.ac.uk/ (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)

IsPrivate

False (1)

Classification

protozoa (1)

Modification

15.994915 (2)
42.010565 (2)
+3amu) (1)
-17.026549 (1)
27.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
45.029395 (1)
57.021464 (1)
6.020129 (1)

Study type

Transcription profiling by array (115)
RNA-seq of coding RNA (26)
ChIP-seq (5)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
Animal - One-color microarray (3)
Animal - High-throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
Other (1)
ScATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (482)
2022 (447)
2023 (423)
2024 (401)
2025 (385)
2020 (375)
2019 (299)
2016 (269)
2018 (256)
2017 (244)
2015 (224)
2014 (137)
2013 (88)
2012 (80)
2011 (60)
2010 (60)
2026 (53)
2008 (25)
2009 (23)
2007 (12)
2006 (8)
2001 (4)
2005 (3)
2000 (2)
2004 (1)
2003 (1)
2002 (1)
1999 (1)

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Single-cell RNA sequencing of a 3D blood-brain-barrier model perfused with P. falciparum-infected red blood cells and egress products

This dataset consists of two individual sample-multiplexing (MULTI-seq) single-cell RNA sequencing experiments, MB10x01 and MB10x02. Single-cell RNA sequencing (10X Genomics) analyses were performed on a microfluidic 3D in vitro blood-brain-barrier model (containing primary human brain microvascular...

ORGANISM(S): Homo sapiens

2025-06-25 | E-MTAB-14463 | biostudies-arrayexpress

Women's experiences following emergency Peripartum hysterectomy at St. Francis hospital Nsambya. A qualitative study.

Not available

S-EPMC7687817 | biostudies-literature

psiCLIP of SmB, Prp16 and Prp22 in C, C* and P spliceosomal complexes

PRJEB37247 | ENA

Atypical cyclin P regulates cancer cell stemness through activation of the WNT pathway.

Not available

S-EPMC8648692 | biostudies-literature

P-TEFb Activation by RBM7 Shapes a Pro-survival Transcriptional Response to Genotoxic Stress.

Not available