Francois E E - OmicsDI

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Unknown (707)
Transcriptomics (136)
Proteomics (50)
Genomics (32)
Metabolomics (5)
Models (1)

Organisms

Homo sapiens (81)
Arabidopsis thaliana (27)
Mus musculus (19)
Saccharomyces cerevisiae (16)
Staphylococcus aureus (8)
Rattus norvegicus (6)
Gallus gallus (3)
Staphylococcus epidermidis (2)
Schizosaccharomyces pombe (2)
Vibrio cholerae (2)
Drosophila melanogaster (2)
Danio rerio (2)
Rattus rattus (1)
Suillus luteus (1)
Cercocebus atys (1)
Laccaria bicolor (1)
human oral metagenome (1)
Rickettsia conorii (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Prochlorococcus marinus (1)
Rana temporaria (1)
Macaca mulatta (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Nicotiana benthamiana (1)
Zea mays (1)
Enterococcus faecium (1)
Helicobacter pylori (1)
Pseudomonas aeruginosa (1)
Bos taurus (1)
Hydra vulgaris (1)

Repository

biostudies-arrayexpress (145)
MassIVE (29)
EGA (23)
pride (16)
MetaboLights (5)
iProX (3)
PAXDB (2)
BioModels (1)

Tissue

Cell culture (4)
Brain (2)
Embryo (2)
Permanent cell line cell (2)
B cell (1)
Blood cell (1)
Cardiomyocyte cell line (1)
Chondrocyte (1)
Colon (1)
Early embryonic cell (1)
Egg (1)
Embryonic stem cell (1)
Epithelial cell (1)
Fibroblast (1)
Lung (1)
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Whole body (1)

Disease

Normal (2)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Precursor T lymphoblastic leukemia (1)
Hutchinson-Gilford Progeria Syndrome (1)
Acute leukemia (1)
Brain cancer (1)
Breast cancer (1)
Colon cancer (1)
Human immunodeficiency virus infectious disease (1)
Inflammatory bowel disease (1)
Inflammatory bowel disease 7 (1)
Melanoma and neural system tumor syndrome (1)
Retinitis (1)
Zika virus congenital syndrome (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (9)
Gel-based experiment (8)
Mass spectrometry (3)
SWATH MS (2)
ILLUMINA, Illumina Genome Analyzer IIx, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina Infinium 1.2M (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Orbitrap Fusion Lumos (22)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
Illumina Genome Analyzer IIx (2)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
Orbitrap Fusion (2)
Liquid Chromatography MS - positive - reverse phase (2)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
Bio-Rad CFX96 Real-time System (1)
Illumina Genome Analyzer II (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
Orbitrap Exploris 480 (1)
Q Exactive HF (1)
Q Exactive Hybrid Quadrupole-Orbitrap Mass Spectrometer (1)
Q-Exactive HF-X (1)
SYNAPT G2-Si (1)
Bruker (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
UHPLC-DAD-HR-MS/MS (1)

Publication Date

2011 (40)
2014 (15)
2021 (14)
2008 (14)
2012 (13)
2013 (12)
2022 (11)
2009 (11)
2015 (10)
2010 (9)
2023 (8)
2016 (8)
2024 (6)
2020 (5)
2025 (5)
2018 (4)
2019 (4)
2026 (3)
2017 (3)
2007 (3)
2005 (2)

UNIPROT ID/AC

10090.ENSMUSP00000032399 (2)
10090.ENSMUSP00000097919 (2)
1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433S_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2A5A_MOUSE (2)
2A5E_MOUSE (2)
2A5G_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
2ABA_MOUSE (2)
3BP1_MOUSE (2)
3HIDH_MOUSE (2)
4EBP1_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
5NTD_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A0A0G2JDV3_MOUSE (2)
A0A0R4J159_MOUSE (2)
A0A140LIF8_MOUSE (2)
A0A1W2P6N8_MOUSE (2)
A0A286YCX6_MOUSE (2)
A0A2I3BQ48_MOUSE (2)

CHEBI ID

CHEBI:15698 (2)
CHEBI:15724 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:16112 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16865 (2)
CHEBI:16919 (2)
CHEBI:17148 (2)
CHEBI:17234 (2)
CHEBI:17256 (2)
CHEBI:17368 (2)
CHEBI:17497 (2)
CHEBI:17568 (2)
CHEBI:17724 (2)
CHEBI:17750 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:27897 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:30745 (2)
CHEBI:30763 (2)
CHEBI:30769 (2)
CHEBI:30794 (2)
CHEBI:32816 (2)

Metabolite Name

Deoxycytidine (3)
10-Hydroxydecanoic acid (2)
2-Hydroxycinnamic acid (2)
Adenine (2)
Behenic acid (2)
Chlorogenic acid (2)
Creatinine (2)
D-Fructose 6-phosphate (2)
Glucose (2)
Hydrocinnamic acid (2)
Hypoxanthine (2)
Indolelactic acid (2)
L-Histidine (2)
L-Homoserine (2)
L-Lysine (2)
L-Proline (2)
L-Tyrosine (2)
Maltotriose (2)
Myristic acid (2)
N4-Acetylcytidine (2)
N6-Acetyl-L-lysine (2)
Oleamide (2)
Pyridoxine (2)
Sucrose (2)
Taurine (2)
Thymidine (2)
Uracil (2)
Uridine (2)
(+)-Pantothenic acid (1)
(+)-gamma-Hydroxy-L-homoarginine (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (80)
ChIP-chip by tiling array (26)
RNA-seq of coding RNA (10)
ChIP-seq (6)
Comparative genomic hybridization by array (5)
ChIP-chip by array (3)
DNA-seq (3)
Methylation profiling by array (3)
Genotyping by array (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2021 (99)
2022 (98)
2023 (79)
2020 (71)
2024 (65)
2025 (63)
2011 (53)
2018 (49)
2017 (40)
2019 (40)
2014 (33)
2016 (28)
2015 (27)
2012 (23)
2009 (18)
2013 (16)
2008 (16)
2010 (13)
2026 (8)
2007 (5)
2005 (3)
2006 (3)
2001 (1)
2000 (1)

Lab affiliation

CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (3)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (2)
Laboratoire de Spectrométrie de Masse BioOrganique, IPHC, Université de Strasbourg, CNRS, UMR7178, Strasbourg, France (2)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, France UniversitÃ© de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, France (1)
Department of Anatomy and Cell Biology, Université de Sherbrooke (1)
Institut Pluridisciplinaire Hubert Curien (IPHC) Laboratoire de Spectrométrie de Masse BioOrganique UMR 7178 CNRS - Université de Strasbourg (1)
Laboratory of Intestinal Physiopathology, Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, QC, Canada (1)
Laboratory of Intestinal Physiopathology, Department of Immunology and Cell Biology, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, QC, J1H 5N4, Canada (1)
Lady Davis Institute, McGill University (1)
The University of Melbourne (1)
UMR6252 CIMAP, team « Applications in Radiobiology with Accelerated Ions”, CEA - CNRS - ENSICAEN - Université de Caen Normandie, Caen, France. (1)
University of Michigan Department of Pathology (1)

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Linking mobile money networks to "e-ROSCAs": An experimental study.

Not available

S-EPMC7775776 | biostudies-literature

Antiviral Activities of Different Interferon Types and Subtypes against Hepatitis E Virus Replication.

Not available

S-EPMC4808167 | biostudies-literature

Crystal structure and DFT study of the zwitterionic form of 3-{(E)-1-[(4-ethoxyphenyl)iminiumyl]ethyl}-6-methyl-2-oxo-2H-pyran-4-olate.

Not available

S-EPMC5956330 | biostudies-literature

High speed e-beam lithography for gold nanoarray fabrication and use in nanotechnology.

Not available

S-EPMC4222405 | biostudies-literature

Transcription profiling of human glioblastomas (56 tumor samples)

A ┬æCartes d┬ÆIdentite des Tumeurs┬Æ (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net) | Affymetrix HG-U133 Plus 2.0 : 56 glioblastomas |Submitter : Aurelien de Reynies | Project leader : Francois Berger

ORGANISM(S): Homo sapiens

2010-07-07 | E-TABM-898 | biostudies-arrayexpress

Transcription profiling of human T-ALL cell cultures treated with Compound E, a gamma-secretase inhibitor or vehicle only (DMSO) for 24 h

The NOTCH1 signaling pathway directly links extracellular signals with transcriptional responses in the cell nucleus and plays a critical role during T-cell development and in the pathogenesis over 50% of human T-cell lymphoblastic leukemia (T-ALL) cases. However, little is known about the transcrip...

ORGANISM(S): Homo sapiens

2008-06-14 | E-GEOD-5827 | biostudies-arrayexpress

Risk-adjusted observed minus expected cumulative sum (RA O-E CUSUM) chart for visualisation and monitoring of surgical outcomes.

Not available

S-EPMC12013565 | biostudies-literature

Crystal structure of (E)-4-hy-droxy-3-{1-[(4-hy-droxy-phen-yl)imino]-eth-yl}-6-methyl-2H-pyran-2-one.

Not available

S-EPMC4571398 | biostudies-literature

Transcriptomic Analysis of E. coli after Exposure to a Sublethal Concentration of Hydrogen Peroxide Revealed a Coordinated Up-Regulation of the Cysteine Biosynthesis Pathway.

Not available

S-EPMC9026346 | biostudies-literature

The low-density lipoprotein receptor and apolipoprotein E associated with CCHFV particles mediate CCHFV entry into cells.