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TranscriptomicsThe YbjN regulon in Escherichia coli
YbjN, an enterobacteria-specific protein, is a multicopy suppressor of ts9 temperature sensitivity in Escherichia coli. Microarray study revealed that the expression level of ybjN was inversely correlated with the expression of flagellar, fimbrial and acid resistance genes. Over-expression of ybjN ...
ORGANISM(S): Escherichia coli 
2011-10-14 | E-GEOD-28630 | biostudies-arrayexpress
MetabolomicsMetabolomic signatures discriminate horses with clinical signs of atypical myopathy from healthy co-grazing horses
Atypical myopathy (AM) is a severe rhabdomyolysis syndrome that occurs in grazing horses. Despite the presence of toxins in their blood, all horses from the same pasture are not prone to display clinical signs of AM. The objective of this study was to compare the blood metabolomic profiles of horses...
2021-08-31 | MTBLS2579 | MetaboLights
TranscriptomicsSmall molecule inhibitors suppress expression of both type III secretion and amylovoran biosynthesis genes in Erwinia amylovora
Microarray analysis of E. amylovora treated with compounds no. 3 and no. 9 identified a total of 588 significantly differentially expressed genes. Among them, 95 and 78 genes were, respectively, induced and suppressed by both compounds as compared to DMSO control. Majority of T3SS genes in E. amylov...
ORGANISM(S): Erwinia amylovora 
2013-12-24 | E-GEOD-45602 | biostudies-arrayexpress
TranscriptomicsParallel selection mapping using artificially selected mice reveals body weight control loci (gene expression)
Understanding how polygenic traits evolve and respond to selection is a major unsolved problem, because challenges exist for identifying genes underlying a complex trait and understanding how multi-locus selection operates in the genome. Here we used artificial selection experiments to study polygen...
ORGANISM(S): Mus musculus 
2012-06-29 | E-GEOD-36443 | biostudies-arrayexpress
MetabolomicsGNPS - C. elegans as a model for inter-individual variation in metabolism
Fox BW, Ponomarova O, Lee YU, Zhang G, Giese EG, Walker M, Roberto NM, Na H, Reis-Rodrigues P, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM (2022) C. elegans as a model for inter-individual variation in metabolism
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2021-07-13 | MSV000087810 | GNPS
ProteomicsConservation of the PBL-RBOH immune module in land plants
The rapid production of reactive oxygen species (ROS) is a key signaling output in plant immunity. In the angiosperm model species, Arabidopsis thaliana (hereafter Arabidopsis), recognition of non- or altered-self elicitor patterns by cell-surface immune receptors activates the receptor-like cytopla...
ORGANISM(S): Marchantia polymorpha Escherichia coli 
2023-02-06 | PXD038639 | Pride
Oxidative burst Marchantia Kinase Phosphorylation 
ProteomicsC. elegans as a model for inter-individual variation in metabolism
Fox BW, Ponomarova O, Lee YU, Zhang G, Giese EG, Walker M, Roberto NM, Na H, Reis-Rodrigues P, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM (2022) C. elegans as a model for inter-individual variation in metabolism
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2021-07-13 | MSV000087810 | MassIVE
TranscriptomicsTranscription profiling of Methanosarcina mazei Goe1 in response to bismuth nitrate.
Pattern of gene expression of M. mazei in response to 10 uM bismuth nitrate was analyzed relative to gene expression pattern of M. mazei grown in the presence of 30 uM potassium nitrate (control cultures). Therefore, five pre-cultures of M. mazei was grown to mid-exponential growth-phase. Then, the ...
ORGANISM(S): Methanosarcina mazei 
2011-10-01 | E-MTAB-787 | biostudies-arrayexpress
TranscriptomicsThe Rcs regulon in Erwinia amylovora
We conducted genome-wide microarray analyses to determine the regulons of RcsB and RcsC in liquid medium and, for the first time, on immature pear fruit. Our array analyses identified a total of 648 genes differentially regulated by the RcsCB in vitro and in vivo. Consistent with our previous findin...
ORGANISM(S): Erwinia amylovora 
2012-02-18 | E-GEOD-30751 | biostudies-arrayexpress
GenomicsMicrobiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape
We profiled transcriptome and accessible chromatin landscapes in intestinal epithelial cells (IECs) from mice reared in the presence or absence of microbiota. We show that regional differences in gene transcription along the intestinal tract were accompanied by major alterations in chromatin organiz...
ORGANISM(S): Mus musculus 
2014-06-07 | E-GEOD-57919 | biostudies-arrayexpress
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