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Unknown (2161)
Proteomics (157)
Transcriptomics (75)
Genomics (20)
Metabolomics (2)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (105)
Andropogon gerardi (80)
Bacteria (80)
Bartonella quintana JK 31 (80)
Canis lupus familiaris (80)
Clavibacter nebraskensis NCPPB 2581 (80)
Cnidaria (80)
Ensifer adhaerens (80)
Human alphaherpesvirus 1 strain 17 (80)
Human alphaherpesvirus 1 strain KOS (80)
Human betaherpesvirus 5 (80)
Human herpesvirus 2 strain 186 (80)
Mus musculus (30)
Enterococcus faecium (3)
Saccharomyces cerevisiae SK1 (2)
Pan troglodytes (2)
Pseudomonas aeruginosa (2)
Candida albicans (2)
Agrobacterium tumefaciens (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Sus scrofa domesticus (1)
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Clostridium acetobutylicum (1)
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Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Agrobacterium fabrum str. C58 (1)
Vibrio cholerae (1)
Halobacterium salinarum NRC-1 (1)

Organisms

Mus musculus (3)
Agrobacterium fabrum str. C58 (1)
Penicillium sp. INA 01369 (1)
Homo sapiens (1)

Repository

pride (80)
biostudies-arrayexpress (76)
PeptideAtlas (69)
EGA (9)
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geo (4)
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GPMDB (1)

Tissue

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Eye (1)
Heart (1)

Disease

Mock infected (1)
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Primary open angle glaucoma (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (38)
Affinity purification coupled with mass spectrometry proteomics (29)
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Chemical cross-linking coupled with mass spectrometry proteomics (8)
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Illumina MiSeq (2)
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DiaPASEF (1)

Instrument Platform

LTQ Orbitrap Velos (30)
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Illumina HiSeq 2000 (1)
AB 5500xl Genetic Analyzer (1)
Instrument (1)
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Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
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Unknown (1)

Publication Date

2014 (66)
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2012 (16)
2010 (14)
2023 (14)
2009 (12)
2015 (9)
2025 (9)
2026 (9)
2024 (9)
2018 (8)
2019 (8)
2017 (7)
2013 (7)
2011 (7)
2021 (6)
2016 (6)
2020 (6)
2006 (3)
2008 (2)
2007 (1)

UNIPROT ID/AC

A5A3E0 (68)
B4E3A4 (68)
P07900 (68)
P08238 (68)
P60709 (68)
P62736 (68)
P63261 (68)
P63267 (68)
P68032 (68)
P68133 (68)
P68363 (68)
Q00610 (68)
Q00610-2 (68)
Q13707 (68)
Q562R1 (68)
Q58FF7 (68)
Q58FF8 (68)
Q71U36 (68)
Q9BYX7 (68)
B3KML9 (67)
I3L4N8 (67)
L0R849 (67)
O43707 (67)
P00338 (67)
P00338-3 (67)
P00441 (67)
P04350 (67)
P06576 (67)
P06733 (67)
P07195 (67)

ENSEMBL ID

ENSG00000170477 (57)
ENSG00000229353 (44)
ENSG00000147251 (25)
ENSG00000247315 (15)
ENSG00000176092 (3)
ENSG00000204131 (3)

CHEBI ID

CHEBI:63253 (1)
CHEBI:62194 (1)
CHEBI:71394 (1)
CHEBI:139108 (1)
CHEBI:61425 (1)
CHEBI:48681 (1)
CHEBI:28137 (1)
CHEBI:27537 (1)
CHEBI:28935 (1)
CHEBI:24549 (1)
CHEBI:28706 (1)
CHEBI:28264 (1)
CHEBI:28599 (1)
CHEBI:104362 (1)
CHEBI:104012 (1)
CHEBI:61958 (1)
CHEBI:42465 (1)
CHEBI:71316 (1)
CHEBI:62012 (1)
CHEBI:26900 (1)
CHEBI:44800 (1)
CHEBI:61396 (1)
CHEBI:63251 (1)
CHEBI:61125 (1)
CHEBI:61191 (1)
CHEBI:143010 (1)
CHEBI:50577 (1)
CHEBI:45075 (1)
CHEBI:61508 (1)
CHEBI:68471 (1)

Metabolite Name

D-carnitinyl-CoA (1)
Crotonobetainyl-CoA (1)
Adenosine thiamine triphosphate (1)
6-hydroxymethyl-dihydropterin pyrophosphate (1)
Hexadecanoyl-phosphate (n-C16:0) (1)
Psicoselysine (1)
Ferric 2,3-dihydroxybenzoylserine (1)
Dihydromonapterin (1)
Tetradecenoate (n-C14:1) (1)
L-alanine-L-glutamate (1)
L-alanine-D-glutamate (1)
Cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (1)
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran (1)
5'-deoxyribose (1)
Octanoate (protein bound) (1)
3-Aminoacrylate (1)
Cyclic pyranopterin monophosphate (1)
L-ascorbate-6-phosphate (1)
Dehydroglycine (1)
Gamma-glutamyl-gamma aminobutyric acid (1)
3-keto-L-gulonate-6-phosphate (1)
2,3-dihydroxycinnamic acid (1)
Cis-3-(3-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol (1)
3-(3-hydroxy-phenyl)propionate (1)
Hexadecenoate (n-C16:1) (1)
D-Glycero-D-manno-heptose 7-phosphate (1)
Octanoate (n-C8:0) (1)
2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (1)
6,7-Dihydropteridine (1)
L-Allo-threonine (1)

First Public Date

2025 (3)
2024 (2)
2014 (1)

Study type

Transcription profiling by array (53)
Methylation profiling by array (5)
ChIP-seq (4)
RNA-seq of coding RNA (4)
Other (3)
Unknown experiment type (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (247)
2023 (228)
2022 (212)
2025 (212)
2020 (197)
2024 (167)
2018 (150)
2019 (140)
2017 (110)
2016 (91)
2015 (90)
2014 (63)
2010 (53)
2013 (48)
2012 (45)
2011 (39)
2009 (37)
2026 (34)
2008 (20)
2007 (15)
2006 (12)
2005 (7)
2001 (5)
2002 (4)
1999 (3)
2004 (2)
2003 (2)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

Institute Krems Bioanalytics, IMC University of Applied Sciences, 3500 Krems, Austria (3)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (2)
Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum Germany (2)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (2)
Gene Center Ludwig-Maximilians-Universitat-Munchen (2)
Gene Center Munich and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany (2)
Institute Krems Bioanalytics, IMC University of Applied Sciences, 3500, Krems, Austria (2)
Interfaculty Institute for Microbiology and Infection Medicine Tübingen Eberhard-Karls Universität Tübingen Auf der Morgenstelle 28 72072 Tübingen (2)
AG Evolutionäre Genetik der Pflanzen Fak. V - Institut für Biologie und Umweltwissenschaften (IBU) Carl von Ossietzky Universität Oldenburg Carl von Ossietzky-Str. 9-11 26111 Oldenburg (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, 37077 Göttingen, Germany. (1)
Biologie der Mikroorganismen Ruhr-Universität Bochum (1)
CNIO (1)
Cell biology of neurodegenerative diseases Institute of Anatomy and Cell Biology Ulm University Ulm Germany (1)
Cellular and Molecular Microbiology Interfaculty Institute of Microbiology and Infection Medicine (IMIT) University of Tübingen Elfriede-Aulhorn-Str. 6 72076 Tübingen, Germany (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Center for Plant Molecular Biology (ZMBP) University of Tübingen Tübingen, Germany (1)
Charité - Universitätsmedizin Berlin (1)
Chemistry, Fitzgerald lab, Duke University, USA (1)
Chemistry, Fitzgerald, Duke University, USA (1)
Chemistry, Fitzgerald, Duke university, USA (1)
Comparative Developmental Biology Department of Biological Sciences University of Bergen Norway (1)
Department of Archaeology, Max Planck Institute for the Science of Human History. (1)
Department of Experimental Ophthalmology, Medical Center of the Johannes Gutenberg-University Mainz, Langenbeckstr. 1, 55131 Mainz, Germany Phone: + 49 6131 17 3328 Fax: + 49 06131 4970563 (1)
Department of ophthalmology, experimental and translational ophthalmology, University medical center of the Johannes Gutenberg - University Mainz (1)
Eberhard Karls University Tübingen Faculty of Science Interfaculty Institute of Cell Biology Department of Molecular Biology Auf der Morgenstelle 15 72076 Tübingen Germany (1)
Eberhard Karls University Tübingen Faculty of Science, Interfaculty Institute of Cell Biology Auf der Morgenstelle 15 72076 Tübingen Germany (1)
Eberhard Karls University Tübingen Interfaculty Institute of Microbiology and Infection Medicine (IMIT) (1)
Eberhard-Karls-Universität Tübingen, Center of Plant Molecular Biology, Department of Plant Biochemistry, Auf der Morgenstelle 32, D-72076 Tübingen, Germany (1)
Experimental Ophthalmology Ophthalmology University Medical Center Mainz Germany (1)
Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum (1)

Tags

xref:PubMed:40707493 (3)
xref:PubMed:20437057 (1)
xref:PubMed:38379415 (1)

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Transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant

To learn more about the global effects of phosphatidylcholine (PC)-deficiency in A. tumefaciens, we performed transcriptomic studies comparing the wild type and a PC-deficient DpmtA Dpcs mutant. We expanded the number of affected virulence genes and showed that the loss of PC was correlated with alt...

ORGANISM(S): Agrobacterium tumefaciens str. C58

2010-04-07 | E-GEOD-21223 | biostudies-arrayexpress

Descriptions of four new species of Minyomerus Horn, 1876 sec. Jansen & Franz, 2018 (Coleoptera: Curculionidae), with notes on their distribution and phylogeny.

Not available

S-EPMC6195114 | biostudies-literature

The structure and diversity of freshwater diatom assemblages from Franz Josef Land Archipelago: a northern outpost for freshwater diatoms.

Not available

S-EPMC4768701 | biostudies-literature

Phylogenetic revision of Minyomerus Horn, 1876 sec. Jansen & Franz, 2015 (Coleoptera, Curculionidae) using taxonomic concept annotations and alignments.

Not available

S-EPMC4668883 | biostudies-literature

Quantum Confinement Suppressing Electronic Heat Flow below the Wiedemann-Franz Law.