Franz J J - OmicsDI

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Unknown (893)
Proteomics (102)
Transcriptomics (13)
Genomics (6)
Metabolomics (2)
Other (1)

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Homo sapiens (76)
Mus musculus (10)
Arabidopsis thaliana (4)
Saccharomyces cerevisiae (4)
Bacteria (3)
Escherichia coli (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Staphylococcus aureus (2)
Macaca mulatta (1)
Pan troglodytes (1)
Caenorhabditis elegans (1)
Candida albicans (1)
Halobacterium salinarum NRC-1 (1)
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Amycolatopsis balhimycina (1)
Capra hircus (1)
Hordeum vulgare (1)
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Naegleria sp. NGES2 (1)
Nicotiana benthamiana (1)
Ovis aries (1)
Pristionchus pacificus (1)
Pseudomonas aeruginosa PAO1H2O (1)
Rattus norvegicus (1)
Rhodopseudomonas palustris TIE-1 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Streptococcus pneumoniae R6 (1)
Triticum aestivum (1)
Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 (1)
Yersinia enterocolitica (1)

Repository

PeptideAtlas (62)
pride (37)
biostudies-arrayexpress (14)
EGA (5)
MassIVE (3)
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GPMDB (1)

Tissue

Others (27)
Digestive System (8)
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Cell culture (5)
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Spleen (3)
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Brain microvascular endothelial cell (1)
Cell suspension culture (1)
Embryonic fibroblast (1)
Epithelial cell (1)
Heart (1)
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Leaf (1)
Mesenchymal stem cell (1)
Motor neuron (1)
Peripheral blood mononuclear cell (1)
Retina (1)
Seedling (1)
Solid cancer cell (1)
Whole body (1)

Disease

UV inactivated HSV-1 infected (1)
Not Available (1)
Acute kidney failure (1)
Amyotrophic lateral sclerosis (1)
Bladder transitional cell carcinoma (1)
Disease free (1)
Heart failure (1)
Primary open angle glaucoma (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (12)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Illumina MiSeq (2)
Mass spectrometry (2)
Bottom-up proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (2)

Instrument Platform

LTQ Orbitrap Velos (29)
LTQ Orbitrap Elite (27)
QExactive (6)
Illumina HiSeq 2000 (1)
AB 5500xl Genetic Analyzer (1)
Instrument (1)
LTQ Orbitrap XL (1)
Q Exactive (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
LTQ Orbitrap (1)
Unknown (1)

Publication Date

2014 (59)
2022 (9)
2024 (5)
2023 (5)
2017 (4)
2016 (4)
2011 (4)
2009 (4)
2025 (4)
2019 (4)
2010 (3)
2021 (3)
2018 (3)
2015 (2)
2026 (2)
2012 (1)
2006 (1)
2020 (1)

UNIPROT ID/AC

A5A3E0 (61)
B3KML9 (61)
B4E3A4 (61)
I3L4N8 (61)
M0QY37 (61)
O43707 (61)
P04264 (61)
P04350 (61)
P04792 (61)
P05787 (61)
P07900 (61)
P08238 (61)
P08729 (61)
P0DMV8 (61)
P11021 (61)
P11142 (61)
P11216 (61)
P11217 (61)
P12814 (61)
P12814-3 (61)
P13645 (61)
P17066 (61)
P30153 (61)
P34931 (61)
P35609 (61)
P35609-2 (61)
P35908 (61)
P54652 (61)
P55072 (61)
P60709 (61)

ENSEMBL ID

ENSG00000170477 (54)
ENSG00000229353 (44)
ENSG00000147251 (22)
ENSG00000247315 (12)
ENSG00000176092 (3)
ENSG00000204131 (3)

CHEBI ID

CHEBI:10048 (1)
CHEBI:10049 (1)
CHEBI:103211 (1)
CHEBI:104012 (1)
CHEBI:104121 (1)
CHEBI:104362 (1)
CHEBI:11060 (1)
CHEBI:111006 (1)
CHEBI:1157 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:13389 (1)
CHEBI:1372 (1)
CHEBI:137325 (1)
CHEBI:138794 (1)
CHEBI:139108 (1)
CHEBI:1427 (1)
CHEBI:143010 (1)
CHEBI:145242 (1)
CHEBI:145846 (1)
CHEBI:1467 (1)
CHEBI:15344 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15366 (1)
CHEBI:15412 (1)
CHEBI:15428 (1)
CHEBI:15430 (1)

Metabolite Name

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran (1)
(R)-2,3-Dihydroxy-3-methylbutanoate (1)
(R)-2,3-Dihydroxy-3-methylpentanoate (1)
(R)-Glycerate (1)
(R)-Pantoate (1)
(R)-Pantothenate (1)
(S)-2-Aceto-2-hydroxybutanoate (1)
(S)-3-Hydroxydodecanoyl-CoA (1)
(S)-3-Hydroxyhexanoyl-CoA (1)
(S)-3-Hydroxyoctanoyl-CoA (1)
(S)-3-Methyl-2-oxopentanoate (1)
1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0) (1)
1-Aminopropan-2-ol (1)
1-Pyrroline-5-carboxylate (1)
1-deoxy-D-xylulose (1)
1-deoxy-D-xylulose 5-phosphate (1)
1-dodecanoyl-sn-glycerol 3-phosphate (1)
1-octadecanoyl-sn-glycerol 3-phosphate (1)
10-Formyltetrahydrofolate (1)
2,3,4,5-Tetrahydrodipicolinate (1)
2,3-Dihydrodipicolinate (1)
2,3-dihydroxycinnamic acid (1)
2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine (1)
2-C-methyl-D-erythritol 4-phosphate (1)
2-Dehydropantoate (1)
2-Deoxy-D-ribose 1-phosphate (1)
2-Deoxy-D-ribose 5-phosphate (1)
2-Hydroxy-3-oxopropanoate (1)
2-Isopropylmaleate (1)
2-Methylcitrate (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (2)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (108)
2023 (93)
2022 (92)
2025 (87)
2020 (84)
2024 (69)
2018 (64)
2019 (55)
2016 (41)
2015 (36)
2017 (30)
2026 (23)
2010 (19)
2013 (18)
2009 (17)
2014 (15)
2012 (13)
2011 (12)
2006 (7)
2008 (6)
2007 (6)
2001 (4)
2005 (2)
2004 (2)
2002 (2)
2003 (1)
1998 (1)

Lab affiliation

Faculty of Biology & Biotechnology Ruhr-University Bochum D-44780 Bochum Germany (2)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (2)
Gene Center Munich and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany (2)
Institute Krems Bioanalytics, IMC University of Applied Sciences, 3500 Krems, Austria (2)
Cell biology of neurodegenerative diseases Institute of Anatomy and Cell Biology Ulm University Ulm Germany (1)
Cellular and Molecular Microbiology Interfaculty Institute of Microbiology and Infection Medicine (IMIT) University of Tübingen Elfriede-Aulhorn-Str. 6 72076 Tübingen, Germany (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Charité - Universitätsmedizin Berlin (1)
Department of Archaeology, Max Planck Institute for the Science of Human History. (1)
Department of Experimental Ophthalmology, Medical Center of the Johannes Gutenberg-University Mainz, Langenbeckstr. 1, 55131 Mainz, Germany Phone: + 49 6131 17 3328 Fax: + 49 06131 4970563 (1)
Eberhard Karls University Tübingen Interfaculty Institute of Microbiology and Infection Medicine (IMIT) (1)
Gene Center, LMU Munich (1)
Geomicrobiology Center for Applied Geoscience (ZAG) University of Tübingen (1)
Institut für Medizinische Mikrobiologie und Hygiene Elfriede-Aulhorn-Str. 6 72076 Tübingen Germany (1)
Institut für Medizinische Mikrobiologie und Hygiene Universitätsklinikum Tübingen Elfriede-Aulhorn-Str. 6 72076 Tübingen Germany (1)
Institute for Genetics, University of Cologne, Cologne, Germany (1)
Institute of Immunology, University Medical Center of the Johannes-Gutenberg University Mainz, Mainz, Germany (1)
Institute of Pathology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany (1)
Institute of Pathology, University Medical Center Schleswig-Holstein, Lubeck Site (1)
Interfaculty Institute of Microbiology and Infection Medicine, Institute for Medical Microbiology and Hygiene,UKT Tübingen, 72076 Tübingen, Germany. (1)
Junior Research Group Infection Biology of Salmonella Helmholtz Centre for Infection Research Inhoffenstraße 7 38124 Braunschweig Germany (1)
Laboratory of Gene Technology (LoGT), Katholieke Universiteit Leuven (KU Leuven) (1)
Max Delbrueck Center, Berlin, Germany Berlin Institute of Health, Berlin, Germany (1)
Max Planck Institute for Developmental Biology, Max-Planck-Ring 5, 72076 Tübingen (1)
Max-Planck-Institute of Molecular Plant Physiology, Golm, Germany (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark (1)
University Hospital Bonn, Institute of Medical Microbiology, Immunology and Parasitology, Bonn, Germany (1)
University of Halle-Wittenberg Institute for Biology – General Genetics Weinbergweg 10 06120 Halle (Saale) Germany (1)
University of Tuebingen - Interfaculty Institute of Biochemistry (1)
University of Tuebingen, Interfaculty Institute for Cell Biology, Proteome Center Tuebingen, Auf der Morgenstelle 15, 72076 Tübingen, Germany (1)

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Reassessment of the Transport Mechanism of the Human Zinc Transporter SLC39A2.

Not available

S-EPMC7218795 | biostudies-literature

Finite-temperature violation of the anomalous transverse Wiedemann-Franz law.

Not available

S-EPMC7182422 | biostudies-literature

Wiedemann-Franz behavior at the Weyl points in compressively strained HgTe.

Not available

S-EPMC12669628 | biostudies-literature

Biomarkers of neurodegeneration and glial activation validated in Alzheimer's disease assessed in longitudinal cerebrospinal fluid samples of Parkinson's disease.

Not available

S-EPMC8496858 | biostudies-literature

Proteomic Analysis of the Urothelial Cancer Landscape

SMRD method development, LC-MS/MS evaluation experiment, setup #1, please see publication for details.

ORGANISM(S): Homo sapiens (Human)

2024-06-16 | PXD041873 | Pride

Stoichiometry of the bacterial type III secretion export apparatus

Bacterial type III secretion systems are cell envelope-spanning effector protein-delivery machines essential for colonization and survival of many Gram-negative pathogens and symbionts. The membrane-embedded core unit of these secretion systems is termed needle complex. The needle complex is compose...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2016-02-25 | PXD003113 | Pride

Mass spectrometry Stoichiometry Salmonella Type iii secretion

Calculation of exchange couplings in the electronically excited state of molecular three-spin systems.

Not available

S-EPMC9629084 | biostudies-literature

Evaluations of Skin Permeability of Cannabidiol and Its Topical Formulations by Skin Membrane-Based Parallel Artificial Membrane Permeability Assay and Franz Cell Diffusion Assay.

Not available

S-EPMC9710319 | biostudies-literature

Transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant

To learn more about the global effects of phosphatidylcholine (PC)-deficiency in A. tumefaciens, we performed transcriptomic studies comparing the wild type and a PC-deficient DpmtA Dpcs mutant. We expanded the number of affected virulence genes and showed that the loss of PC was correlated with alt...

ORGANISM(S): Agrobacterium tumefaciens str. C58

2010-04-07 | E-GEOD-21223 | biostudies-arrayexpress

It's positive to be negative: Achilles tendon work loops during human locomotion.

Not available

S-EPMC5495204 | biostudies-literature

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