Frederick C C - OmicsDI

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Unknown (3570)
Transcriptomics (218)
Proteomics (61)
Genomics (46)
Multiomics (13)
Genomic (6)
Metabolomics (5)
Models (3)

Organisms

Homo sapiens (143)
Mus musculus (114)
Rattus norvegicus (11)
Caenorhabditis elegans (7)
Saccharomyces cerevisiae (3)
Escherichia coli (2)
Picea abies (2)
Klebsiella pneumoniae (2)
Ostrinia nubilalis (1)
human nasopharyngeal metagenome (1)
unidentified (1)
Zea mays (1)
Burkholderia mallei (1)
Oncorhynchus mykiss (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
Candida albicans (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Pseudomonas putida KT2440 (1)
Tursiops truncatus (1)

Organisms

Mus musculus (9)
Homo sapiens (8)
Macaca mulatta (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (237)
pride (35)
ENA (22)
PeptideAtlas (15)
MassIVE (9)
dbGaP (6)
EGA (5)
MetaboLights (5)
BioModels (3)
geo (2)
PanoramaPublic (1)

Tissue

Others (12)
Cell culture (4)
Epithelial cell (4)
Plasma Non-glyco (3)
Blood plasma (2)
Melanocyte (2)
T cell (2)
Bile (1)
Brain (1)
Glioblast (1)
Head and neck squamous cell carcinoma cell (1)
Lung (1)
Mesenchymal stromal cell (1)
Respiratory mucus (1)
Retinal pigment epithelium cell (1)
Testis (1)

Disease

Melanoma (4)
Breast cancer (2)
LPS-induced acute lung injury (1)
Primary tumor (1)
Small cell lung carcinoma (1)
Fibrosis (1)
Brain glioblastoma multiforme (1)
Diabetic retinopathy (1)
Malignant neoplasm of ovary (1)
Non-small cell lung carcinoma (1)
Psoriasis (1)

Technology Type

Mass Spectrometry (35)
Affinity purification coupled with mass spectrometry proteomics (18)
Shotgun proteomics (10)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Mass spectrometry (5)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Data-independent acquisition (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (14)
NextSeq 2000 (3)
Illumina HiSeq 2000 (3)
Q Exactive Plus (3)
Q Exactive (3)
Orbitrap Fusion Lumos (2)
Q Exactive HF (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Orbitrap Exploris 480 (1)
Agilent 6520 QTOF (1)
LTQ Orbitrap XL (Thermo Scientific) (1)
LTQ Orbitrap Elite (1)

Publication Date

2014 (42)
2012 (36)
2015 (35)
2013 (35)
2010 (29)
2026 (23)
2016 (23)
2011 (21)
2008 (12)
2024 (7)
2022 (6)
2019 (6)
2009 (5)
2018 (4)
2007 (4)
2025 (4)
2021 (3)
2023 (3)
2005 (2)
2006 (1)
2017 (1)
2020 (1)

UNIPROT ID/AC

P00451 (1)
P00734 (1)
P00740 (1)
P00742 (1)
P01008 (1)
P06700 (1)
P07866 (1)
P08153 (1)
P08709 (1)
P09119 (1)
P10646 (1)
P11746 (1)
P11938 (1)
P12259 (1)
P13365 (1)
P13726 (1)
P20437 (1)
P20438 (1)
P24868 (1)
P24869 (1)
P26309 (1)
P26448 (1)
P27636 (1)
P30283 (1)
P32943 (1)
P33306 (1)
P38634 (1)
P38698 (1)
P38987 (1)
P40316 (1)

ENSEMBL ID

ENSG00000170477 (8)
ENSG00000229353 (3)
ENSG00000147251 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:16335 (3)
CHEBI:16708 (3)
CHEBI:17368 (3)
CHEBI:133596 (2)
CHEBI:143243 (2)
CHEBI:15354 (2)
CHEBI:15698 (2)
CHEBI:15891 (2)
CHEBI:16010 (2)
CHEBI:16393 (2)
CHEBI:16566 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16974 (2)
CHEBI:17562 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17724 (2)
CHEBI:18050 (2)
CHEBI:20607 (2)
CHEBI:27897 (2)
CHEBI:28422 (2)
CHEBI:30915 (2)
CHEBI:49033 (2)
CHEBI:5445 (2)
CHEBI:6650 (2)
CHEBI:71464 (2)
CHEBI:55474 (1)
CHEBI:56080 (1)
CHEBI:61448 (1)

Metabolite Name

(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxybutylidene)amino]hexyl}butanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxydecylidene)amino]hexyl}decanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxyhexylidene)amino]hexyl}hexanimidic acid (1)
(1Z,3R)-N-[(5S)-6-(acetyloxy)-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(1Z,3R)-N-[(5S)-6-hydroxy-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(3R)-3-[(carboxymethyl)amino]butanoic acid (1)
(3R)-3-[(carboxymethyl)amino]decanoic acid (1)
(5Z,8Z,11Z,14Z)-Icosatetraenoic acid; Arachidonate; Arachidonic acid; cis-5,8,11,14-Eicosatetraenoic acid (1)
(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanodecylidene]-L-lysine (1)
(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanododecylidene]-L-lysine (1)
(R)-3-Hydroxy-tetradecanoic acid (1)
(R)-3-hydroxybutyrylcarnitine (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)* (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)* (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)* (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-Stearoylglycerophosphoglycerol (1)
1-arachidonoyl-GPA (20:4) (1)
1-arachidonoyl-GPI (20:4)* (1)
1-lignoceroyl-GPC (24:0) (1)
1-linolenoyl-GPC (18:3)* (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)* (1)
1-linoleoyl-GPA (18:2)* (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2)* (1)

First Public Date

2014 (8)
2013 (3)
2023 (2)
2019 (2)
2015 (2)
2026 (1)
2024 (1)
2021 (1)
2020 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (12)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Bowling Green State University (1)
Bristol Myers Squibb (1)
Carnegie Institution for Science Dept. of Embryology 3520 San Martin Dr Baltimore, MD 21218 (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI) (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA Center of Excellence for Data Driven Discovery, Department of Structural Biology, St Jude Children’s Research Hospital, Memphis, Tennessee 38105, United States (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA. (1)
Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Pathology, Berlin, Germany. (1)
Department of Biochemistry, Schulich School of Medicine and Dentistry, Western University, London, ON, N6A 5C1, Canada (1)
Department of Biochemistry, Western University (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
Gonçalo Moniz Institute, FIOCRUZ, Salvador, Brazil D'Or Institute for Research and Education (IDOR), Salvador, Brazil Center for Biotechnology and Cell Therapy, São Rafael Hospital, Salvador, Brazil (1)
Laboratory of Cell and Developmental Signaling, National Cancer Institute, National Institutes of Health, Frederick, MD 21702, USA (1)
Laboratory of physicochemical and genetic problems in dermatology, Center for Theoretical Problems in Physicochemical Pharmacology at Russian Academy of Sciences (1)
NCI Stadtman Investigator at the Center for Structural Biology in Frederick (1)
The Second Affiliated Hospital of Zhejiang University, Medicine Cancer Institute (1)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
U.S. Army Medical Research Institute of Infectious Diseases, Frederick, Maryland, USA (1)
US Army Medical Research Institute of Infectiouos Diseases, Frederick, MD (1)
USDA/ARS/NADC (1)
Wilmer Eye Institute, Johns Hopkins University, Baltimore, Maryland, United States of America (1)

IsPrivate

False (3)

Study type

Transcription profiling by array (124)
Transcription profiling by RT-PCR (41)
RNA-seq of coding RNA (19)
Other (14)
ChIP-seq (12)
Unknown experiment type (6)
Comparative genomic hybridization by array (6)
DNA-seq (5)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
GRO-seq (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)

Release Date

2021 (277)
2022 (261)
2020 (251)
2023 (249)
2016 (240)
2025 (229)
2015 (226)
2024 (224)
2019 (222)
2014 (212)
2018 (208)
2017 (183)
2013 (181)
2010 (166)
2011 (153)
2012 (132)
2009 (104)
2008 (87)
2007 (45)
2026 (36)
2005 (33)
2006 (18)
2002 (14)
2003 (12)
2004 (11)
2000 (10)
2001 (9)
1999 (9)
1998 (3)
1997 (2)

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Transcription profiling of C. elegans gene response to the pathogenic P. aeruginosa strain PA14.

Analysis of differential gene expression in C. elegans adults exposed to three different bacteria: E. coli strain OP50, wild-type P. aeruginosa PA14 and gacA mutant PA14. Samples were analyzed at 4 hours and 8 hours after exposure to the different bacteria. These studies identified C. elegans genes ...

ORGANISM(S): Caenorhabditis elegans

2008-06-14 | E-GEOD-5793 | biostudies-arrayexpress

HLA-C Level Is Regulated by a Polymorphic Oct1 Binding Site in the HLA-C Promoter Region.

Not available

S-EPMC5142108 | biostudies-literature

Effect of rosiglitazone on adipose gene expression in HSL knockout mice with different diet treatment

To test whether HSL is required for the supply of intrinsic ligands for PPARg for normal adipose differentiation, HSL-/- and wild type (WT) littermates were fed normal chow (NC) and high fat (HF) diets supplemented with or without rosiglitazone (200 mg/kg) for 16 weeks. The expression of diabetes re...

ORGANISM(S): Mus musculus

2012-03-18 | E-GEOD-20588 | biostudies-arrayexpress

Allosteric regulation of autoinhibition and activation of c-Abl.

Not available

S-EPMC9399898 | biostudies-literature

Sequence dependence of C-end rule peptides in binding and activation of neuropilin-1 receptor.

Not available

S-EPMC6146283 | biostudies-literature

C/EBPγ suppresses senescence and inflammatory gene expression by heterodimerizing with C/EBPβ.

Not available

S-EPMC3753923 | biostudies-literature

HIV-1 Control by NK Cells via Reduced Interaction between KIR2DL2 and HLA-C^∗12:02/C^∗14:03.

Not available

S-EPMC5184766 | biostudies-literature

Crosslinking MS of Separase-Securin-PP2A_A/B/C

Separase-Securin complex with Protein Phospatase 2A (A/B/C) has been crosslinked using by Sulfo-SDA crosslinker.

ORGANISM(S): Homo sapiens (Human)

2026-04-09 | PXD068391 | Pride

Human

Early Presence of HIV-1 Subtype C in Washington, D.C.

Not available

S-EPMC6080110 | biostudies-literature

Transcription profiling of C. elegans mutants daf-2(e1368) and daf-2(e1368);pmk-1(km25), between daf-2(e1368), daf-2(e1368);daf-16(mgDf47)

Analysis of genes differentially expressed between daf-2(e1368) and daf-2(e1368);pmk-1(km25) and between daf-2(e1368) and daf-2(e1368);daf-16(mgDf47). These studies identified genes upregulated by wild-type PMK-1 and wild-type DAF-16. Experiment Overall Design: Three independent biological replicat...

ORGANISM(S): Caenorhabditis elegans

2008-06-14 | E-GEOD-5801 | biostudies-arrayexpress

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3910 Results

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