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TranscriptomicsTranscription profiling of human neuroblastoma cells grown at 1, 5, or 21% oxygen and harvested at seven time points between 0 and 72 hours
SK-N-BE(2)c neuroblastoma cells were grown at 1, 5, or 21% oxygen and harvested at seven time-points between 0 and 72 hours. All samples were hybridized vs. a common reference pool
ORGANISM(S): Homo sapiens 
2007-06-12 | E-MEXP-836 | biostudies-arrayexpress
TranscriptomicssiRNA knock-down of MXI1 in human neuroblastoma cells
SK-N-BE(2)c and SK-N-SH neuroblastoma cells were transfected in triplicates with siRNA against MXI1 or an unspecific control siRNA and grown at hypoxia (1 % O 2) for 24 hours. RNA extracted from each siMXI1 sample was hybridized to the corresponding control siRNA sample in dye-swap duplicates giving...
ORGANISM(S): Homo sapiens 
2009-12-04 | E-MEXP-2033 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of seven human neuroblastoma cell lines subjected to 1% or 21% oxygen for 72 hours
Seven neuroblastoma cell lines were subjected to 1 or 21 % oxygen for 72 hours
ORGANISM(S): Homo sapiens 
2007-12-28 | E-MEXP-1374 | biostudies-arrayexpress
TranscriptomicsMurine microenvironment metaprofiles associate with human cancer etiology and intrinsic subtypes
We developed a mouse model that captures radiation effects on host biology by transplanting unirradiated Trp53 null mammary tissue to sham or irradiated hosts. Gene expression profiles of tumors that arose in irradiated mice are distinct from those that arose in naM-CM-/ve hosts. Host irradiation in...
ORGANISM(S): Mus musculus 
2013-04-04 | E-GEOD-42742 | biostudies-arrayexpress
ProteomicsProteome characterization of Breast Cancer Cell lines
Protein profiling of 18 breast cancer cell lines in triplicates using TMT10-plex.
ORGANISM(S): Homo Sapiens (human) 
2020-07-04 | PXD013276 | JPOST Repository
ProteomicsSubCellBarcode: Scalable proteome-wide mapping of protein localization and relocalization
We have devised a simple and robust LC-MS/MS compatible protocol for subcellular protein localization studies. Here, we combine it with in depth proteome profiling and utilize the resulting dataset to predict the subcellular localization of more than 12000 proteins in 5 human cancer cell lines. The ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-02-17 | MSV000086899 | MassIVE
ProteomicsBreast cancer proteome landscape
Proteome characterization of 45 breast tumors using HiRIEF nanoLC-MS/MS.
ORGANISM(S): Homo Sapiens (human) 
2019-02-04 | PXD008841 | JPOST Repository
ProteomicsTumor and adjacent normal tissue
Proteome characterization of 5 breast tumors and adjacent normal tissue using HiRIEF nanoLC-MS/MS.
ORGANISM(S): Homo Sapiens (human) 
2019-02-04 | PXD011385 | JPOST Repository
TranscriptomicsPARP1- and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription
Transcriptionally active and inactive chromatin domains tend to segregate into separate sub-nuclear compartments to maintain stable expression patterns. However, we have uncovered here an inter-chromosomal network connecting active loci enriched in circadian genes to repressed lamina-associated doma...
ORGANISM(S): Homo sapiens 
2015-08-27 | E-GEOD-26880 | biostudies-arrayexpress
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