Freshwater ecosystems

OmicsDI

Browse
Submit Data
Databases
API
Help

2500 Results

Show all Save search Copy query

Show results for

Unknown (1953)
Genomics (503)
Transcriptomics (18)
Proteomics (17)
Metabolomics (6)
Other (2)
Methylation profiling (1)

Organisms

Daphnia magna (5)
Methylobacter tundripaludum 21/22 (2)
Archaea (2)
Bacteria (2)
synthetic construct (2)
Microcystis aeruginosa (2)
Oncorhynchus nerka (1)
Carassius carassius (1)
Phoxinus septimaniae (1)
Sphingomonas sp. NM05 (1)
Bordetella sp. IITR-02 (1)
freshwater sediment metagenome (1)
Escherichia coli BL21 (1)
Rhodococcus jostii RHA1 (1)
biofilm metagenome (1)
Fungi (1)
Synechococcus sp. WH 7803 (1)
marine sediment metagenome (1)
Daphnia pulex (1)
Viruses (1)
Eukaryota (1)
soil metagenome (1)
Cyprinus carpio (1)
Escherichia coli DH5[alpha] (1)
Eurytemora affinis (1)
Carassius gibelio (1)
Carassius auratus (1)
Phaeodactylum tricornutum (1)
Hydra vulgaris (1)
Escherichia coli K-12 (1)

Organisms

freshwater metagenome (30)
lake water metagenome (30)
freshwater sediment metagenome (8)
aquatic metagenome (7)
Oncorhynchus kisutch (4)
Fluviibacter phosphoraccumulans (3)
Daphnia magna (3)
marine metagenome (3)
Oncorhynchus nerka (2)
wetland metagenome (2)
microbial mat metagenome (2)
Bacteria (2)
riverine metagenome (2)
biofilm metagenome (2)
groundwater metagenome (2)
Siniperca chuatsi (2)
biofilter metagenome (2)
Desulfitobacterium hafniense TCP-A (1)
Desulfitobacterium sp. LBE (1)
Unio delphinus (1)
Planktothrix agardhii NIVA-CYA 126/8 (1)
actinobacterium SCGC AAA028-A23 (1)
actinobacterium SCGC AAA044-N04 (1)
Sulfuriferula (1)
Phoxinus septimaniae (1)
Apricaphanius iberus (1)
Synechococcus sp. A10-1-5-1 (1)
alpha proteobacterium SCGC AAA280-B11 (1)
alpha proteobacterium SCGC AAA027-L15 (1)
alpha proteobacterium SCGC AAA027-J10 (1)

Repository

ENA (502)
geo (18)
pride (9)
MassIVE (6)
biostudies-arrayexpress (4)
MetaboLights (4)
GNPS (2)
iProX (2)

Tissue

Whole body (2)
Blood (1)
Blood serum (1)
Brain (1)
Extracellular vesicle (1)
Eye (1)
Gonad (1)
Spermatozoon (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (6)
Mass spectrometry (3)
Bottom-up proteomics (3)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Metaproteomics (1)

Instrument Platform

Q Exactive (3)
Illumina HiSeq 4000 (2)
X500R QTOF (2)
Orbitrap Fusion (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
LTQ FT-Ultra (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (10)
2025 (7)
2021 (5)
2026 (5)
2020 (4)
2018 (3)
2022 (3)
2016 (2)
2011 (2)
2023 (1)
2017 (1)
2019 (1)
2015 (1)

CHEBI ID

CHEBI:29019 (2)
CHEBI:17992 (2)
CHEBI:17754 (2)
CHEBI:30746 (2)
CHEBI:16704 (2)
CHEBI:17151 (2)
CHEBI:18183 (2)
CHEBI:17268 (2)
CHEBI:33508 (2)
CHEBI:16335 (2)
CHEBI:26078 (2)
CHEBI:175443 (1)
CHEBI:185275 (1)
CHEBI:174786 (1)
CHEBI:177995 (1)
CHEBI:89050 (1)
CHEBI:73803 (1)
CHEBI:171893 (1)
CHEBI:193361 (1)
CHEBI:175117 (1)
CHEBI:192311 (1)
CHEBI:7017 (1)
CHEBI:169239 (1)
CHEBI:192030 (1)
CHEBI:89410 (1)
CHEBI:175103 (1)
CHEBI:88430 (1)
CHEBI:191752 (1)
CHEBI:173507 (1)
CHEBI:177281 (1)

Metabolite Name

Glycerol (2)
Pyroglutamic acid (2)
Benzoic acid (2)
Myo-Inositol (2)
Glyceric acid (2)
Adenosine (2)
Uridine (2)
Sucrose (2)
(ÃÂ±)-2-(1-Methylpropyl)-4,6-dinitrophenol (1)
Sophrose (1)
Cinnamic acid, 3,4-dimethoxy-, trans- (1)
Carbohydrate (unknown) (1)
Fatty acid (unknown) (1)
Glucose (?) (1)
Glycopyranose (1)
Glucopyranose [-H20] (1)
Monosaccharide (unknown) (1)
Lyxonic acid-1,4-lactone (1)
Aldopentose (Lyxose or Arabinose) (1)
Arabinonic acid-1,4-lactone (1)
Butenedioic acid (1)
Ethyl dodecanoate (1)
2,3-Dihydroxybutanedioic acid (1)
Ethyl tetradecanoate (1)
Isohyodeoxycholic acid (1)
3-(3,4-Dihydroxy-5-methoxy)-2-propenoic acid (1)
Mesna (1)
Alpha-Hydroxyisobutyric acid (1)
Alpha-CEHC (1)
1,3,5-Trihydroxybenzene (1)

First Public Date

2026 (80)
2025 (66)
2024 (62)
2022 (46)
2021 (44)
2017 (40)
2023 (33)
2013 (32)
2020 (29)
2019 (22)
2018 (13)
2015 (12)
2014 (11)
2016 (10)
2012 (2)

Study type

RNA-seq of coding RNA (2)
Animal - High-throughput sequencing (1)
Transcription profiling by array (1)

Release Date

2025 (285)
2022 (227)
2023 (206)
2024 (180)
2020 (175)
2021 (157)
2019 (131)
2018 (125)
2017 (96)
2015 (79)
2016 (78)
2014 (56)
2026 (52)
2013 (35)
2012 (21)
2011 (19)
2008 (7)
2010 (6)
2009 (5)
2003 (5)
2007 (4)
2006 (4)
2000 (2)
2005 (1)
2004 (1)

Lab affiliation

Department of Clinical and Experimental Medicine, Cell biology, Faculty of Health Science Linköping University, SE-581 83 Linköping, Sweden (1)
EDyP (1)
Faculty of Fisheries and Protection of Water, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in Ceske Budejovice, Czech Republic (1)
Forschungszentrum Juelich ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Toxicology Permoserstraße 15, 04318 Leipzig, Germany (1)
Investigador Ramon y Cajal, grupo Bionanosurf, Instituto de nanociencia y materiales de ARagón (Zaragoza, España) (1)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (1)
Norwegian University of Life Sciences (1)
University of Basel, Department of Environmental Sciences, Geoecology Research Group, Klingelbergstrasse 27, 4056 Basel, Switzerland (1)

Previous page
1 / 250
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 250
Next page

Sort by:

Relevance

Page size

Systems toxicology of a tire-wear pollutant: Multi-omics evidence for bioenergetic reprogramming in freshwater clams

The increasing release of tire-derived transformation products into aquatic ecosystems has raised significant environmental concerns, particularly regarding 6PPD-quinone (6PPDQ), a highly toxic compound formed from a widely used tire antioxidant. Despite growing attention, its chronic effects and...

2026-03-26 | MTBLS14142 | MetaboLights

Stream water column samples from nine Mediterranean freshwater ecosystems

Stream water column samples from nine Mediterranean freshwater ecosystems Other

PRJNA1131982 | ENA

freshwater metagenome

Geospatial distribution of viral communities in tropical freshwater ecosystems

PRJNA400853 | ENA

Diversity, spatial distribution and activity of fungi in freshwater ecosystems.

Not available

S-EPMC6387782 | biostudies-literature

freshwater metagenome

Geospatial distribution of bacteria communities in tropical freshwater ecosystems