Friedrich R R - OmicsDI

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Unknown (4961)
Proteomics (66)
Transcriptomics (28)
Genomics (26)
Metabolomics (23)
Models (4)

Organisms

Homo sapiens (39)
Mus musculus (16)
Saccharomyces cerevisiae (6)
Sus scrofa domesticus (6)
Felis catus (2)
Neisseria gonorrhoeae (2)
Escherichia coli (2)
Komagataella pastoris DSMZ 70382 (2)
Staphylococcus aureus (2)
Bacillus subtilis (1)
Ptomaphagus hirtus (1)
Staphylococcus epidermidis (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Anopheles gambiae (1)
Aspergillus fumigatus (1)
Bacillus pumilus (1)
Bacteroides fragilis NCTC 9343 (1)
Caenorhabditis elegans (1)
Cupriavidus basilensis (1)
Cupriavidus necator H16 (1)
Drosophila melanogaster (1)
Eulimnogammarus cyaneus (1)
Helicobacter hepaticus (1)
Luteibacter (1)
Manihot esculenta (1)
Mucilaginibacter (1)
Nostoc punctiforme PCC 73102 (1)
Paenibacillus sp. (1)
Pedobacter sp. (1)

Organisms

Mycolicibacterium smegmatis (6)
Caenorhabditis elegans (3)
Arabidopsis thaliana (2)
Homo sapiens (2)
Mus musculus (2)
Rhizobium phaseoli (1)
Seminavis robusta (1)
Hordeum vulgare (1)
Drosophila melanogaster (1)

Repository

pride (62)
biostudies-arrayexpress (28)
ENA (24)
MetaboLights (23)
BioModels (4)
MassIVE (3)
EGA (2)
PanoramaPublic (1)

Tissue

Cell culture (12)
Embryonic stem cell (7)
Epithelial cell (6)
Macrophage (5)
Stem cell (3)
Blood (2)
Colon (2)
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Lung (2)
Blood plasma (1)
Blood serum (1)
Cell suspension culture (1)
Cerebral cortex glial cell (1)
Conidium (1)
Early embryonic cell (1)
Electrically active cell (1)
Erythrocyte (1)
Feces (1)
Femur (1)
HeLa cell (1)
Mammary epithelial cell line (1)
Oocyte (1)
Ovarian surface epithelial cell (1)
Ovary (1)
Permanent cell line cell (1)
Primary cell (1)
Respiratory epithelial cell (1)
Root (1)
Saliva (1)
Tibia (1)

Disease

Colon cancer (2)
Malignant neoplasm of ovary (2)
Acute leukemia (1)
Bacterial gastritis (1)
Bacterial infectious disease (1)
Bladder transitional cell carcinoma (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Colitis (1)
Disease free (1)
Hermansky-Pudlak syndrome (1)
Lung cancer (1)
Nipah virus encephalitis (1)
Non-small cell lung carcinoma (1)
Pancreatic cancer (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (62)
Shotgun proteomics (32)
Mass spectrometry (19)
Data-dependent acquisition (13)
Bottom-up proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry assay (4)
Data-independent acquisition (4)
SWATH MS (4)
Gel-based experiment (2)
Top-down proteomics (2)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Liquid Chromatography MS - positive - reverse phase (4)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Orbitrap elite negative (Thermo Scientific) (2)
Orbitrap elite positive (Thermo Scientific) (2)
QExactive negative (Thermo Scientific) (2)
QExactive positive (Thermo Scientific) (2)
QTOF G6550A negative (Agilent) (2)
QTOF G6550A positive (Agilent) (2)
QTRAP 6500 negative (AB Sciex) (2)
QTRAP 6500 positive (AB Sciex) (2)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200 (1)
BD FACSDiscover S8 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Dionex UltiMate 3000 HPLC (Thermo Scientific instrument model) (1)
EASY-Spray C18 column (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive (1)
Autoflex speed smartbeam (1)
Biological experiment negative - Orbitrap velos CID (Thermo Scientific) (1)
Biological experiment negative - Orbitrap velos HCD (Thermo Scientific) (1)
Biological experiment negative - QTRAP 4000 (AB Sciex) (1)
Biological experiment positive - Orbitrap velos CID (Thermo Scientific) (1)
Biological experiment positive - Orbitrap velos HCD (Thermo Scientific) (1)

Publication Date

2026 (18)
2025 (12)
2024 (11)
2023 (9)
2021 (9)
2014 (8)
2018 (8)
2017 (7)
2020 (6)
2016 (5)
2015 (5)
2022 (5)
2008 (4)
2011 (3)
2005 (2)
2012 (2)
2019 (2)
2010 (1)
2009 (1)
2007 (1)
2004 (1)

UNIPROT ID/AC

O14744 (1)
O14980 (1)
O95149 (1)
P08621 (1)
P09012 (1)
P09234 (1)
P14678 (1)
P43487 (1)
P52292 (1)
P52297 (1)
P52298 (1)
P60510 (1)
P62304 (1)
P62306 (1)
P62308 (1)
P62314 (1)
P62316 (1)
P62318 (1)
P62826 (1)
Q09161 (1)
Q14974 (1)
Q16637 (1)
Q8IZH2 (1)
Q92973 (1)
Q96RS0 (1)
Q9H814 (1)

CHEBI ID

CHEBI:10642 (3)
CHEBI:17234 (3)
CHEBI:30769 (3)
CHEBI:33942 (3)
CHEBI:36751 (3)
CHEBI:16010 (2)
CHEBI:16335 (2)
CHEBI:16414 (2)
CHEBI:16457 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:17268 (2)
CHEBI:17295 (2)
CHEBI:17750 (2)
CHEBI:17822 (2)
CHEBI:17895 (2)
CHEBI:17929 (2)
CHEBI:18186 (2)
CHEBI:18222 (2)
CHEBI:26271 (2)
CHEBI:26984 (2)
CHEBI:26986 (2)
CHEBI:15422 (1)
CHEBI:16134 (1)
CHEBI:32484 (1)
CHEBI:37565 (1)
CHEBI:43474 (1)
CHEBI:58189 (1)
CHEBI:74035 (1)
CHEBI:84596 (1)

Metabolite Name

Adenosine (3)
Citric acid (3)
L-arginine (3)
L-phenylalanine (3)
L-proline (3)
L-valine (3)
LPC 13:0|LPC 13:0|LPC 13:0|LPC 13:0|LPC 13:0 (3)
LPE 18:0|LPE 18:0|LPE 18:0|LPE 18:0|LPE 18:0 (3)
PC 14:0/18:0|PC 14:0/18:0|PC 14:0/18:0|PC 14:0/18:0|PC 14:0/18:0 (3)
PC 18:0/18:2|PC 18:0/18:2|PC 18:0/18:2|PC 18:0/18:2|PC 18:0/18:2 (3)
PG 18:0/18:2|PG 18:0/18:2|PG 18:0/18:2|PG 18:0/18:2|PG 18:0/18:2 (3)
4-Hydroxybenzaldehyde (2)
Adenine (2)
Alanine (2)
Cer 16:0|Cer 16:0|Cer 16:0|Cer 16:0|Cer 16:0 (2)
Cer 17:0|Cer 17:0|Cer 17:0|Cer 17:0|Cer 17:0 (2)
Cer 18:0|Cer 18:0|Cer 18:0|Cer 18:0|Cer 18:0 (2)
Cer 18:1|Cer 18:1|Cer 18:1|Cer 18:1|Cer 18:1 (2)
Cer 20:0|Cer 20:0|Cer 20:0|Cer 20:0|Cer 20:0 (2)
Creatine (2)
Glutathione (2)
Glutathione disulfide (2)
Glycine (2)
Guanine (2)
Guanosine (2)
Hypoxanthine (2)
IMP (2)
Inosine (2)
L-Phenylalanine (2)
L-Tryptophan (2)

First Public Date

2014 (8)
2017 (4)
2026 (2)
2024 (2)
2023 (1)
2022 (1)
2021 (1)
2020 (1)
2019 (1)
2016 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (3)
Petri net (1)

Lab affiliation

Genome Regulation, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (3)
Department of Gene Regulation Friedrich Miescher Institutefor Biomedical Research (2)
Friedrich-Loeffler-Institute (2)
Hannover Medical School Institute for Clinical Biochemistry (OE 4340) Carl-Neuberg-Strasse 1 Building J03, Level 04, Room 1291 (Office), Room 1250 (Lab) 30625 Hannover (2)
Institute for Microbiology University of Greifswald Friedrich-Ludwig-Jahnstr. 15 17489 Greifswald Germany (2)
1) Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, Jena, Germany 2) Department of Microbiology and Molecular Biology, Friedrich Schiller University, Jena, Germany (1)
Berlin Institute of Health (BIH) at Charité – Universitätsmedizin Berlin, BIH Center for Regenerative Therapies (BCRT), Experimental Immunotherapy (1)
Broad Institute (1)
Charité - Universitätsmedizin Berlin (1)
Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Cleveland Clinic Lerner Research Institute (1)
Department Molecular Toxicology, Helmholtz-Centre for Environmental Research GmbH (UFZ) (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, CH-8093, Switzerland ( lab head ) (1)
Department of Gene Regulation Friedrich Miescher Institute for Biomedical Research (1)
Department of Microbial Proteomics, Institute for Microbiology, Ernst-Moritz-Arndt-University-Greifswald, Friedrich-Ludwig-Jahn-Straße 15, 17487 Greifswald (1)
Department of Pathology, Stanford University School of Medicine; Stanford, CA, USA (1)
Department of Pharmaceutical/Medicinal Chemistry, Institute of Pharmacy, Friedrich Schiller University Jena, Philosophenweg 14, 07743 Jena, Germany (1)
Director of the Friedrich Miescher Institute for Biomedical Research Maulbeerstrasse 66 CH-4058 Basel Switzerland (1)
Discovery Proteomics Facility University of Oxford (1)
Division of Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Staudtstraße 5, 91058 Erlangen (1)
Dörte Becher Department of Microbial Proteomics, Institute for Microbiology, Ernst-Moritz-Arndt-University Greifswald, Friedrich-Ludwig-Jahnstraße 15a, 17489 Greifswald, Germany (1)
Ernst-Moritz-Arndt University Greifswald Institute of Microbiology Friedrich-Ludwig-Jahn-Strasse 15 D-17487 Greifswald, Germany (1)
Experimental Tumor Pathology, Institute of Pathology, University Hospital Erlangen, Friedrich‐Alexander University Erlangen‐Nürnberg (FAU), Erlangen 91054, Germany (1)
Friedrich Miescher Institute for Biomedical Research (FMI) Basel, Switzerland (1)
Friedrich Miescher Institute for Biomedical Research (FMI), Basel, Switzerland (1)
Friedrich Miescher Institute for Biomedical Research Epigenetics Department Lab 1.22 (1)
Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland (1)
Friedrich Miescher Laboratory of the Max Planck Society, Max-Planck-Ring 9, 72076 Tübingen, Germany. (1)
Friedrich Schiller University Jena (1)
Friedrich-Loeffler-Institut (1)

IsPrivate

False (4)

Modification

N6 (1)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (9)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
Methylation profiling by array (1)

Release Date

2022 (552)
2025 (546)
2021 (535)
2023 (517)
2024 (470)
2020 (395)
2019 (303)
2018 (266)
2017 (221)
2016 (219)
2015 (182)
2014 (145)
2011 (109)
2012 (98)
2026 (96)
2013 (92)
2010 (60)
2009 (39)
2008 (36)
2006 (24)
2007 (22)
2005 (20)
2004 (10)
2000 (9)
2002 (6)
2001 (5)
1999 (4)
1998 (4)
2003 (3)
1997 (1)

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R-group replacement database for medicinal chemistry.

Not available

S-EPMC8288244 | biostudies-literature

monaLisa: an R/Bioconductor package for identifying regulatory motifs.

Not available

S-EPMC9048699 | biostudies-literature

QuasR: quantification and annotation of short reads in R.

Not available

S-EPMC4382904 | biostudies-literature

partR2: partitioning R² in generalized linear mixed models.

Not available

S-EPMC8162244 | biostudies-literature

Dynamic Transitions for Fast Joint Acquisition and Reconstruction of CEST- Rex$$ {R}_{ex} $$ and T1$$ {T}_1 $$.

Not available

S-EPMC12850581 | biostudies-literature

miRetrieve-an R package and web application for miRNA text mining.

Not available

S-EPMC8696973 | biostudies-literature

Chemoproteomic target deconvolution reveals Histone Deacetylases as targets of (R)-lipoic acid.

Not available

S-EPMC10272112 | biostudies-literature

Anoxia in Ralstonia eutropha H16

Ralstonia eutropha H16 is a denitrifying microorganism able to use nitrate and nitrite as terminal electron acceptors under oxygen deprivation. To identify proteins showing an altered expression pattern in response to oxygen supply, R. eutropha cells grown aerobically and anaerobically were compared...

ORGANISM(S): Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)

2014-09-01 | PXD000888 | Pride

mutscan-a flexible R package for efficient end-to-end analysis of multiplexed assays of variant effect data.

Not available

S-EPMC10236832 | biostudies-literature

H3K9me2 and BRCA1 cooperate to prevent satellite repeat transcription, R-loop formation and germline sterility

PRJNA392877 | ENA

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5108 Results

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Organisms

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