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TranscriptomicsTranscription profiling of human CD133+ immature blasts from patients with AML/RAEB
CD133-positive immature blasts were purified from bone marrow of the patients. Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc). SUBMITTER_CITATION: Yamashita Y, Ohashi J, Hirai Y, Choi YL, Kaneda R, Fujiwara S-i, Arai Y, Akutsu M, Tsutsumi C, Miyazaki Y, Usuki K, Teramura M, Mitani ...
ORGANISM(S): Homo sapiens 
2008-06-12 | E-GEOD-1427 | biostudies-arrayexpress
ProteomicsProteome of rice shoot apical meristem
DNA methylation is an epigenetic modification that specifies the basic state of pluripotent stem cells and regulates the developmental transition from stem cells to various cell types. In flowering plants, the shoot apical meristem (SAM) contains a pluripotent stem cell population which generates th...
ORGANISM(S): Oryza sativa (Rice) 
2020-08-14 | PXD020608 | Pride
Sam Rice Shoot apical meristem Flowering 
TranscriptomicsCharacterization of transcription patterns of bacteriophage fRSL1 genes during infection cycle.
fRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection cycle of fRSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes lacking dete...
ORGANISM(S): Ralstonia solanacearum 
2010-07-21 | E-GEOD-23017 | biostudies-arrayexpress
TranscriptomicsGene expression profiles of serous ovarian cancer samples
To elucidate the mechanisms of rapid progression of serous ovarian cancer, gene expression profiles from forty-three ovarian cancer tissues comprising eight early stage and thirty-five advanced stage tissues were performed using oligonucleotide microarrays of 18,716 genes. By non-negative matrix fac...
ORGANISM(S): Homo sapiens 
2009-07-19 | E-GEOD-12470 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human CD34+ fractions from AML for chromosome copy number analysis
CD34-positive fractions were used for mRNA preparation, which was hybridized to HGU 133 Plus 2.0 arrays. Experiment Overall Design: CD34-positive fractions of 22 AML patients were analyzed.
ORGANISM(S): Homo sapiens 
2008-06-13 | E-GEOD-4608 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human AML samples (GEO Super Series)
This SuperSeries is composed of the following subset Series:; GSE4602: AML genome hybridization to HGU133 Plus 2.0; GSE4608: AML mRNA hybridization to HGU133 Plus 2.0 Experiment Overall Design: Refer to individual Series
ORGANISM(S): Homo sapiens 
2008-06-13 | E-GEOD-4610 | biostudies-arrayexpress
TranscriptomicsMethylation profiling of human colon cancer specimens with or without methylation of the MLH1 promoter.
Expression profile was obtained for GeneChip probe sets among colon cancer specimens with or without the methylation of MLH1 promoter.
ORGANISM(S): Homo sapiens 
2007-08-29 | E-GEOD-2138 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human CD34- and + fractions from AML cells
CD34-positive and negative fractions were used for genomic DNA preparation, which was hybridized to HGU133 Plus 2.0 arrays. Experiment Overall Design: Samples with a suffix "-C" are CD34-negative controls, and those with a suffix "-L" are CD34-positive leukemic fractions. A total of 23 pairs were an...
ORGANISM(S): Homo sapiens 
2008-06-13 | E-GEOD-4602 | biostudies-arrayexpress
TranscriptomicsTranscription changes due to TET1 knockdown in HCT116 colorectal cancer cells.
Transcriptional profiling of HCT116 cells transfected with either control siRNA or TET1 siRNA was analyzed using whole human genome microarrays. To identify genes regulated by TET1 in colorectal cancer, HCT116 cells were transfected with either control siRNA or TET1 siRNA, and total RNA was extracte...
ORGANISM(S): Homo sapiens 
2015-09-04 | E-GEOD-66512 | biostudies-arrayexpress
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