Functional characterisation

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Unknown (1172)
Genomics (262)
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Organisms

Homo sapiens (41)
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sponge metagenome (1)
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soil metagenome (1)
metagenome (1)

Repository

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Tissue

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Oculocutaneous albinism type VII (1)
Pancreas adenocarcinoma (1)
Pancreatic ductal carcinoma (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (66)
Shotgun proteomics (31)
Bottom-up proteomics (14)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-independent acquisition (8)
Gel-based experiment (7)
Mass spectrometry (4)
SWATH MS (3)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina HiSeq 4000, ILLUMINA (1)
ILLUMINA, Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
NextSeq 500 (5)
Illumina HiSeq 2500 (4)
Illumina Genome Analyzer IIx (2)
NextSeq 2000 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
NextSeq 500, 75 bp single end lane (1)
Illumina Hybridisation Oven (1)
Fluidics station (1)
Axon GenePix 4000A scanning hardware (1)
Illumina iScan (1)
BD FACSARIA II (1)
454 GS 20 (1)
Agilent G2505B scanner (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
BGISEQ-500 (1)
Illumina HiSeq 3000 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
SYNAPT HDMS (Waters) (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2025 (24)
2024 (24)
2026 (23)
2023 (20)
2013 (20)
2020 (17)
2021 (16)
2010 (16)
2012 (15)
2016 (14)
2011 (13)
2009 (13)
2022 (12)
2017 (10)
2014 (10)
2018 (9)
2008 (7)
2015 (6)
2007 (5)
2019 (4)
2005 (3)
2006 (1)

CHEBI ID

CHEBI:55334 (1)
CHEBI:136935 (1)
CHEBI:80988 (1)
CHEBI:80987 (1)
CHEBI:79324 (1)
CHEBI:136948 (1)
CHEBI:27842 (1)
CHEBI:136946 (1)
CHEBI:136950 (1)
CHEBI:136954 (1)
CHEBI:136951 (1)
CHEBI:136926 (1)
CHEBI:136953 (1)
CHEBI:136955 (1)
CHEBI:136930 (1)
CHEBI:136922 (1)
CHEBI:136957 (1)
CHEBI:47791 (1)
CHEBI:50703 (1)
CHEBI:136945 (1)
CHEBI:136942 (1)
CHEBI:136952 (1)
CHEBI:136944 (1)
CHEBI:136939 (1)
CHEBI:28311 (1)
CHEBI:80546 (1)
CHEBI:5395 (1)
CHEBI:79352 (1)
CHEBI:65019 (1)
CHEBI:1865 (1)

Metabolite Name

Pelargonidin 3-O-rutinoside-5-O-beta-D-glucoside (anthocyanin) (1)
1,2-bis-O-Sinapoyl-beta-D-glucoside (1)
Delphinidin 3-O-(6''-O-malonyl)-β-glucoside (anthocyanin) (1)
Quercetin 3-β-D-glucoside (flavonoid) (1)
Coumaric acid-β-D-glucoside (1)
2,5-Dihydroxybenzoate 2-O-β-D-glucoside (1)
Cinnamoyl beta-D-glucoside (1)
8-(Methylthio)octylisothiocyanate (1)
4-Methoxy-3-indolylmethylamine (1)
Gluconasturtiin (2-phenethyl glucosinolate) (1)
Glucotropaeolin (benzyl glucosinolate) (1)
Glucohirsutin (methylsulfinyloctyl glucosinolate) (1)
Glucoibarin (methylsulfinylheptyl glucosinolate) (1)
Glucohesperin (methylsulfinylhexyl glucosinolate) (1)
Glucoalyssin (methylsulfinylpentyl glucosinolate) (1)
Glucolesquerellin (6-methylthiohexyl glucosinolate) (1)
Glucoraphanin (methylsulfinylbutyl glucosinolate) (1)
Glucoberteroin (methylthiopentyl glucosinolate) (1)
Glucoerucin (4-methylthiobutyl glucosinolate) (1)
Progoitrin (2-hydroxy-3-butenyl glucosinolate) (1)
Sinigrin (propenyl glucosinolate) (1)
Gluconapin (butenyl glucosinolate) (1)
9-Methylthiononylhydroximoyl-L-cysteine (1)
2-Oxo-9-methylthiononanoate (1)
2-Oxo-6-methylthiohexanoate (1)
Sulfoglucobrassicin (N-sulfoindol-3-yl)-methyl glucosinolate) (1)
Glucobrassicin (indol-3-ylmethyl glucosinolate, I3G) (1)
7-Methylthioheptyl-desulfoglucosinolate (1)
Desulfoglucobrassicin (indolylmethyl-desulfoglucosinolate) (1)
Desulfoglucoberteroin (5-methylthiopentyl-desulfoglucosinolate) (1)

First Public Date

2026 (36)
2025 (26)
2024 (26)
2022 (20)
2014 (17)
2021 (14)
2020 (14)
2023 (12)
2018 (10)
2017 (10)
2015 (7)
2013 (7)
2019 (6)
2016 (5)
2012 (3)

Classification

bacteria (3)
helminths (2)
fungi (2)
protozoa (2)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (10)
RNA-seq of coding RNA from single cells (8)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (5)
Genotyping by array (4)
ChIP-seq (4)
Unknown experiment type (3)
ChIP-chip by tiling array (3)
Human - High-throughput sequencing (3)
DNA-seq (3)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
ATAC-seq (1)
RIP-seq (1)
Other (1)

Release Date

2025 (122)
2023 (113)
2022 (110)
2021 (106)
2020 (105)
2019 (80)
2018 (77)
2024 (74)
2016 (69)
2017 (65)
2013 (56)
2015 (49)
2014 (49)
2010 (41)
2012 (40)
2011 (38)
2026 (26)
2009 (21)
2008 (16)
2007 (10)
2005 (8)
2006 (6)
2003 (5)
2002 (4)
2004 (3)
2001 (1)
2000 (1)

Lab affiliation

Wellcome Trust Sanger Institute (3)
The University of Melbourne (2)
University of Freiburg, Institute of Biology II, Biochemistry and Functional Proteomics (2)
Biotech Research and Innovation Centre (BRIC), University of Copenhagen (UCPH), Ole Maaløes Vej 5, 2200 Copenhagen, Denmark (1)
Cardiac Bioengineering Lab, QIMR Berghofer Medical Research Institute, Brisbane, QLD, AUS (1)
Cardiac Bioengineering lab, QIMR Berghofer Medical Research Institute, Herston, QLD, AUD (1)
Cell Signalling & Proteomics Group, Barts Cancer Institue, Queen Mary University of London, London, UK (1)
Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia. (1)
Centre for Oral, Clinical and Translational Science, King's College London, London, United Kingdom (1)
Centre for Proteome Research Institute of Intergrative Biology University of Liverpool (1)
Charles Perkins Centre, School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia. (1)
Charles University in Prague Faculty of Science, Department of Parasitology BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Biological Chemistry John Innes Centre Norwich Research Park Norwich NR4 7UH (1)
Department of Large Animals Diseases and Clinic, Institute of Veterinary Medicine, Warsaw University of Life Sciences, Nowoursynowska 166, 02-787, Warsaw, Poland (1)
Department of Oncology / University of Oxford (1)
Director, Institute of Advanced Study in Science and Technology (IASST), Vigyan Path, Paschim Boragaon, Guwahati 781035, Assam, India (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Faculty of Medicine of the University of Porto Alameda Prof. Hernâni Monteiro, 4200-319 Porto, Portugal (1)
Génétique Moléculaire, Génomique, Microbiologie, Université de Strasbourg, UMR 7156 CNRS, 67000 Strasbourg, France. (1)
Harry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Head Proteomics and Metabolomics Core Facility (1)
Head of Drug Discovery and Evaluation Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic (1)
Head of Proteomics and Metabolomics Core Facility (1)
Institute for Molecular Bioscience, The University of Queensland, Australia (1)
Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G61 1QH (1)
Laboratory for Quantitative Proteomics, School of Life Sciences, University of Dundee (1)
Leibniz Institute on Aging, Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany (1)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (1)
M.V.Sc., PG Diploma in IPR, Master of IP Law, Ph.D, ARS Head, Southern Campus of ICAR-National Dairy Research Institute, Adugodi, Bangalore, India, 560030 (1)

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Functional characterisation of CpG islands in human and mouse tissues

Tissue-specific methylation patterns suggest a role for CpG island (CGI) methylation in differentiation and cell-type-specific gene regulation. We have applied CXXC affinity purification (CAP), MBD affinity purification (MAP) and chromatin immunoprecipitation (ChIP) in combination with solexa sequen...

EGAS00001000075 | EGA

Functional Characterisation of the Core Autophagy Protein ATG5 in Dictyostelium discoideum

PRJNA596406 | ENA

Characterisation of microRNA expression in post-natal mouse mammary gland development

Background: The differential expression pattern of microRNAs (miRNAs) during mammary gland development might provide insights into their role in regulating the homeostasis of the breast epithelium. Our aim was to analyse these regulatory functions by deriving a comprehensive tissue-specific combined...

ORGANISM(S): Mus musculus

2010-06-25 | E-GEOD-15057 | biostudies-arrayexpress

EGAS00001000075-sc-20120802 - samples

Functional characterisation of CpG islands in human tissues

EGAD00001000212 | EGA

Functional Characterisation of the Ubiquitin-like Core Autophagy Protein ATG12 in Dictyostelium discoideum

PRJNA509858 | ENA

Functional characterisation of rare variants in genes encoding the MAPK/ERK signalling pathway identified in long-lived Leiden Longevity Study participants

Human longevity, coupled to compression of age-related disease, is heritable. However, few common genetic variants have been linked to longevity, suggesting that rare, family-specific variants may also play a role. We therefore investigated whole-genome sequencing data of long-lived families from th...

ORGANISM(S): Mus musculus (Mouse)

2026-03-16 | PXD063190 | Pride

Molecular characterisation of soft tissue tumours: a gene expression study

Soft-tissue tumours are derived from mesenchymal cells such as fibroblasts, muscle cells, or adipocytes, but for many such tumours the histogenesis is controversial. We aimed to start molecular characterisation of these rare neoplasms and to do a genome-wide search for new diagnostic markers. We ana...

ORGANISM(S): Homo sapiens

2005-10-13 | E-GEOD-3443 | biostudies-arrayexpress

Characterisation of the functional and transcriptomic effects of pro-inflammatory cytokines on human EndoC-βH5 beta cells

PRJNA905377 | ENA

Cellular, molecular and functional characterisation of YAC transgenic mouse models of Friedreich ataxia.

Not available

S-EPMC4157886 | biostudies-literature

Identification of molecular nociceptors in Octopus vulgaris through functional characterisation in Caenorhabditis elegans.

Not available

S-EPMC12919962 | biostudies-literature

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