Functional redundancy

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CHEBI:36090 (3)
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Metabolite Name

Resveratrol (3)
Galactose (3)
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Acetoin (2)
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Uracil (2)
Rhamnose (2)
Deoxypyridinoline (2)
Epicatechin (2)
Genistein (2)
Spermine (2)
Orotic acid (2)
Niacinamide (2)
Lithocholic acid glycine conjugate (2)

First Public Date

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Modelling Approach

Petri net (1)
Ordinary differential equation model (1)

Lab affiliation

Faculty of Medicine, University of Ottawa, Ottawa, ON Canada (3)
School of Biosciences, University of Sheffield, Sheffield, UK (3)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
University of Montpellier, Institut de Génomique Fonctionnelle, France (2)
Lab Head (2)
EDyP (2)
Department of Cell Biology and Physiology, Washington University in St. Louis, St. Louis, Missouri, USA (1)
Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland (1)
Department of Molecular Developmental Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, the Netherlands (1)
Tytgat Institute for Liver and Intestinal Research, Academic Medical Center, Meibergdreef 69-71, 1105 BK Amsterdam, The Netherlands. (1)
Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee (1)
Department of Aquatic Ecology, Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland (1)
Proteomics and Metabolomics Unit, Basic Research Department, Children's Cancer Hospital 57357 Cairo, (CCHE-57357), Cairo 11562, Egypt. (1)
Chair for Biochemistry University Rostock formerly Chair for Biochemistry of Plants, Ruhr-University Bochum (1)
Functional Proteomics Laboratory, Department of Science and Technology, Federal University of São Paulo, São José dos Campos, SP, Brazil (1)
Department of Medicine, University of Wisconsin - Madison (1)
Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, Brazil and UNIGRANRIO-Universidade do Grande Rio, Caxias, Rio de Janeiro-Brazil (1)
Institute of Molecular Biology (IMB), Mainz 55128, Germany (1)
iRIP Unit, Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, B-9000 Ghent, Belgium (1)
Department of Biological Sciences, National University of Singapore, Singapore (1)
Department of Pathology, University of South Alabama, Mobile, AL (1)
Proteomics Center, Erasmus MC, Rottterdam (1)
Institut Curie, Paris Sciences et Lettres Research University, INSERM U934/ CNRS, UMR3215 (1)
INRA, UMR 1019, Centre de recherche en nutrition humaine, Université d'Auvergne, F-63122 Saint Genès Champanelle, France. (1)
Department of Molecular Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Switzerland (1)
Department of Epidemiology, Preclinical Research and Advanced Diagnostics, National Institute of infectious diseases IRCCS Lazzaro Spallanzani, Rome (1)
Division of Molecular Hematology, Department of Laboratory Medicine, Lund Stem Cell Center, Faculty of Medicine, Lund University, Lund, Sweden (1)
INRA, UMR 1313 Unité Génétique Animale animale et Biologie Intégrative (1)
Laboratory of Non-coding RNA and Genome Rearrangements, Institute of Biochemistry and Biophysics, PAS (1)
Faculty of Medicine, University of Ottawa (1)

IsPrivate

False (2)

Classification

bacteria (5)
fungi (1)

Modification

3x(2)H labeled N6-acetyl-L-lysine (1)

Study type

Transcription profiling by array (112)
RNA-seq of coding RNA (43)
ChIP-seq (16)
ChIP-chip by tiling array (14)
RNA-seq of non coding RNA (13)
Other (5)
Transcription profiling by tiling array (3)
RNA-seq of total RNA (3)
Unknown experiment type (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

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The stability and functional redundancy of a microbial cheese ecosystem subjected to a biotic perturbation

The cheese microbial community is dense with relatively low complexity and composed of cultivable prokaryotic and eukaryotic microorganisms. The ripening process can thus be reproduced under controlled conditions. A reduced microbial community composed of yeasts and bacteria was assembled to mimic t...

2024-04-29 | MTBLS6968 | MetaboLights

Proteome-Level Functional Redundancy in the Human Gut Microbiome

Here, we quantify the proteome-level functional redundancy in the human gut microbiome using metaproteomics and network approaches.In particular, we used an ultra-deep metaproteomics approach based on high-pH reverse phase fractionation. The data analysis revealed high protein-level functional redun...

ORGANISM(S): human gut metagenome

2023-06-08 | PXD027297 | Pride

Extensive Functional Redundancy of Mammalian Enhancers

PRJNA362215 | ENA

Systematic Metaproteomic Mapping of Ex vivo Gut Microbiota Functional Responses to Therapeutic Drugs (2)

Some therapeutic compounds can influence our gut microbiota, but a comprehensive understanding of their impact on microbial systems ecology remains largely unexplored. This study examines the impact of 312 therapeutic compounds on metaproteomes of six ex vivo human gut microbiota, generating 4.6 mil...

ORGANISM(S): human gut metagenome

2025-08-28 | PXD056930 | Pride

Systems ecology Gut microbiome Metaproteomics Functional response

Functional redundancy of the three insulin receptors of cockroaches

PRJNA1097959 | ENA

Deciphering functional redundancy in the human microbiome.

Not available

S-EPMC7719190 | biostudies-literature

Functional redundancy in tRNA dihydrouridylation.

Not available

S-EPMC11162810 | biostudies-literature

Lower functional hippocampal redundancy in mild cognitive impairment.