Gao D D - OmicsDI

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Unknown (17475)
Proteomics (372)
Transcriptomics (345)
Genomics (80)
Metabolomics (67)
Models (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (355)
Mus musculus (228)
Arabidopsis thaliana (26)
Drosophila melanogaster (16)
Rattus norvegicus (16)
Oryza sativa (10)
Sus scrofa (6)
Danio rerio (6)
Zea mays (4)
Macaca mulatta (3)
Oryza sativa Japonica Group (2)
Sorghum bicolor (2)
Penicillium oxalicum (1)
Fusarium verticillioides (1)
Megalobrama amblycephala (1)
Pseudopodoces humilis (1)
Trichinella spiralis (1)
Metarhizium acridum (1)
Rhizobium etli CFN 42 (1)
Rosa hybrid cultivar (1)
Tetrahymena thermophila (1)
Shewanella oneidensis MR-1 (1)
Populus tomentosa (1)
Cucumis sativus (1)
uncultured bacterium (1)
Zea mays subsp. mexicana (1)
Musca domestica (1)
Bombyx mori (1)
Aphis gossypii (1)
Pan troglodytes (1)

Organisms

Caenorhabditis elegans (3)
Homo sapiens (1)

Repository

biostudies-arrayexpress (392)
pride (243)
iProX (92)
MetaboLights (64)
MassIVE (30)
EGA (25)
ENA (5)
geo (4)
GNPS (3)
jPOST (3)
PAXDB (2)
PeptideAtlas (2)
BioModels (1)
GPMDB (1)

Tissue

Cell culture (59)
Epithelial cell (13)
Liver (13)
Lung (12)
Brain (11)
Blood plasma (10)
Leaf (10)
Heart (7)
Permanent cell line cell (7)
Cell suspension culture (6)
Whole body (6)
Blood cell (5)
Plant cell (5)
Colon (4)
Hepatocyte (4)
Skeletal muscle (4)
Bone marrow (3)
Breast (3)
Embryonic stem cell (3)
Epithelial cell of lung (3)
Macrophage (3)
Primary cell (3)
Retina (3)
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Testis (3)
Male Reproductive System (2)
Blood platelet (2)
Blood serum (2)
HeLa cell (2)

Disease

Breast cancer (6)
Colon cancer (5)
Kidney cancer (4)
Prostate adenocarcinoma (4)
Acute leukemia (3)
Brain cancer (3)
Cardiovascular system disease (3)
Cervix carcinoma (3)
Liver cancer (3)
Lung adenocarcinoma (3)
Lung cancer (3)
Brain glioblastoma multiforme (2)
Malignant neoplasm of ovary (2)
Non-small cell lung carcinoma (2)
Pancreatic ductal adenocarcinoma (2)
Stomach cancer (2)
Type 2 diabetes mellitus (2)
Pulmonary arterial hypertension (1)
Osteocytes/osteoblasts (1)
Not Available (1)
Bacterial sepsis (1)
Bladder neck obstruction (1)
Brain ischemia (1)
Cachexia (1)
Carcinoma (1)
Developmental and epileptic encephalopathy 9 (1)
Disease free (1)
Endocervical adenocarcinoma (1)
Endometrial Endometrioid Adenocarcinoma (1)
Gastric adenocarcinoma (1)

Technology Type

Mass Spectrometry (243)
Shotgun proteomics (116)
Mass spectrometry (53)
Bottom-up proteomics (34)
Data-dependent acquisition (26)
Gel-based experiment (24)
Data-independent acquisition (19)
Affinity purification coupled with mass spectrometry proteomics (18)
SWATH MS (16)
Top-down proteomics (9)
Mass spectrometry assay (7)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SRM/MRM (5)
NMR spectroscopy (4)
DiaPASEF (3)
Mass spectrometry imaging (3)
Illumina HiSeq 2000 (2)
Proteogenomics (2)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
HDMSE (1)
MSE (1)
Metaproteomics (1)

Instrument Platform

Q Exactive (8)
Illumina HiSeq 2500 (4)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Orbitrap Eclipse (3)
Q Exactive Plus (3)
LTQ Orbitrap Velos (3)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Agilent 5975C Series GC/MSD (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
LTQ Orbitrap Elite (2)
Orbitrap Fusion (2)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Instrument (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap (1)
LTQ Orbitrap Discovery (1)
LTQ Orbitrap XL (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Q Exactive HF-X (1)
Synapt G2 MS (1)

Publication Date

2013 (77)
2025 (76)
2024 (67)
2023 (65)
2014 (64)
2022 (62)
2012 (55)
2015 (54)
2021 (44)
2016 (38)
2010 (36)
2026 (33)
2020 (32)
2019 (30)
2011 (30)
2018 (19)
2017 (19)
2009 (16)
2008 (7)
2007 (4)
2006 (4)
2005 (1)

UNIPROT ID/AC

P04049 (1)
P0DP23 (1)
P28482 (1)
Q02750 (1)
14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
3BHS1_MACMU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15741 (20)
CHEBI:17368 (20)
CHEBI:17596 (20)
CHEBI:15354 (19)
CHEBI:15428 (19)
CHEBI:16704 (19)
CHEBI:17568 (19)
CHEBI:30769 (19)
CHEBI:17154 (18)
CHEBI:7916 (18)
CHEBI:16335 (17)
CHEBI:37024 (17)
CHEBI:15891 (16)
CHEBI:16737 (16)
CHEBI:16919 (16)
CHEBI:16708 (15)
CHEBI:17295 (15)
CHEBI:18012 (15)
CHEBI:32816 (15)
CHEBI:48131 (15)
CHEBI:15756 (14)
CHEBI:15971 (14)
CHEBI:16865 (14)
CHEBI:17191 (14)
CHEBI:17351 (14)
CHEBI:17533 (14)
CHEBI:17750 (14)
CHEBI:17895 (14)
CHEBI:18237 (14)
CHEBI:39124 (1)

Metabolite Name

Adenosine (13)
L-Arginine (13)
Uracil (13)
Hypoxanthine (12)
Adenine (11)
Citric acid (11)
Inosine (11)
L-Phenylalanine (11)
Pyroglutamic acid (11)
Taurine (11)
Uridine (11)
Azelaic acid (10)
Creatinine (10)
Pantothenic acid (10)
Sucrose (10)
Xanthine (10)
Creatine (9)
L-Isoleucine (9)
L-Proline (9)
Palmitic acid (9)
Uric acid (9)
Allantoin (8)
Benzaldehyde (8)
Choline (8)
Cytidine (8)
Dodecanoic acid (8)
Gluconic acid (8)
Indole (8)
Kynurenic acid (8)
L-Histidine (8)

First Public Date

2017 (3)
2022 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Pacific Northwest National Laboratory (5)
Center for Excellence in Molecular Cell Science, CAS (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)
ETH Zurich (2)
Jiangnan University (2)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (2)
Mayo Clinic, Department of Oncology (2)
SIMM (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia (2)
Tianjin Medical University General Hospital (2)
Westlake University (2)
fudan university (2)
westlake.edu.cn (2)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
1Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
Advanced Water Managment Center, The University of Queensland (1)
Analytical Research Center for Organic and Biological Molecules, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai 201203, China (1)
Associate Professor Tracy Putoczki The Walter and Eliza Hall Institute of Medical Research Australia (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK (1)
BGI-Shenzhen (1)
BGI-shenzhen (1)
Basic Immune System of Plants / Protein Mass SpectrometryMax Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Baylor College of Medicine (1)

IsPrivate

False (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (216)
RNA-seq of coding RNA (63)
ChIP-seq (32)
RNA-seq of non coding RNA (17)
Methylation profiling by high throughput sequencing (14)
Comparative genomic hybridization by array (9)
MicroRNA profiling by array (7)
ChIP-chip by tiling array (5)
Methylation profiling by array (5)
Unknown experiment type (4)
Other (4)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)

Release Date

2025 (2623)
2022 (2391)
2023 (2147)
2024 (2056)
2021 (1806)
2020 (1341)
2019 (986)
2018 (798)
2017 (650)
2016 (610)
2015 (524)
2014 (427)
2026 (374)
2013 (328)
2012 (260)
2011 (156)
2010 (122)
2009 (89)
2008 (67)
2007 (28)
2006 (22)
2005 (16)
2004 (14)
2002 (9)
2003 (8)
2001 (4)
1998 (4)
2000 (3)
1999 (3)

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Next generation sequencing of Desulfovibrio vulgaris Hildenborough in the presence of Free Nitrous Acid stress

Purpose: Free nitrous acid (FNA) has recently been demonstrated as an antimicrobial agent to a range of microorganisms. However, its antimicrobial mechanism is largely unknown. For this study Desulfovibrio vulgaris Hildenborough was selected to gain a systematic understanding of the antimicrobial me...

ORGANISM(S): Desulfovibrio vulgaris

2016-07-01 | E-GEOD-78834 | biostudies-arrayexpress

Single-cell RNA-sequencing of spike-specific CD4 and CD8 T cells after COVID-19 vaccination in healthy and XLA donors

Gao et al.

ORGANISM(S): Homo sapiens

2022-07-19 | E-MTAB-11845 | biostudies-arrayexpress

Gao-Zi-Yao improves learning and memory function in old spontaneous hypertensive rats.

Not available

S-EPMC9148521 | biostudies-literature

Low acyl gellan gum immobilized Lactobacillus bulgaricus T15 produce D-lactic acid from non-detoxified corn stover hydrolysate.

Not available

S-EPMC10009946 | biostudies-literature

Induction of systemic disease resistance in Nicotiana benthamiana by the cyclodipeptides cyclo (l-Pro-l-Pro) and cyclo (d-Pro-d-Pro).

Not available

S-EPMC6638238 | biostudies-literature

Effect of Vitamin D Supplementation on Glycemic Control in Prediabetes: A Meta-Analysis.

Not available

S-EPMC8707376 | biostudies-literature

Kinetics of avibactam inhibition against Class A, C, and D β-lactamases.

Not available

S-EPMC3784710 | biostudies-literature

Redesign of a novel D-allulose 3-epimerase from Staphylococcus aureus for thermostability and efficient biocatalytic production of D-allulose.

Not available

S-EPMC6432756 | biostudies-literature

A data integration multi-omics approach to study calorie restriction-induced changes in insulin sensitivity

The mechanisms responsible for weight loss-induced improvement in insulin sensitivity are partially understood. Greater insight can now be achieved through deep phenotyping and data integration. Here, we used an integrative approach to investigate associations between changes in insulin sensitivity ...

2021-02-11 | MTBLS653 | MetaboLights

Positive Association of Urinary Dimethylarsinic Acid (DMA^V) with Serum 25(OH)D in Adults Living in an Area of Water-Borne Arsenicosis in Shanxi, China.

Not available

S-EPMC10820359 | biostudies-literature

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18342 Results

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