Gao Yan Y - OmicsDI

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Unknown (2731)
Proteomics (98)
Transcriptomics (14)
Metabolomics (14)
Genomics (13)
Multiomics (1)
Other (1)

Organisms

Archaea (46)
Bacteria (46)
Borrelia (46)
Botrytis cinerea (46)
Candida albicans (46)
Clostridium perfringens (46)
Cnidaria (46)
Eukaryota (46)
Fasciola (46)
Fungi (46)
Hepatitis B virus (46)
Human betaherpesvirus 5 (46)
Influenza C virus (46)
Homo sapiens (45)
Mus musculus (10)
Rattus norvegicus (3)
Arabidopsis thaliana (2)
Macaca fascicularis fascicularis (2)
Saccharomyces cerevisiae (2)
Shewanella oneidensis MR-1 (1)
Macaca mulatta (1)
Zea mays (1)
Cucumis sativus (1)
Helicobacter pylori G27 (1)
Plukenetia volubilis (1)
Pseudomonas aeruginosa PAO1 (1)
Rhodopseudomonas palustris CGA009 (1)
Solanum tuberosum (1)
human blood metagenome (1)
cellular organisms (1)

Repository

pride (46)
iProX (44)
biostudies-arrayexpress (16)
MetaboLights (12)
EGA (11)
MassIVE (7)
GNPS (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (7)
Epithelial cell (5)
Liver (4)
Brain (3)
Hepatocyte (3)
Testis (3)
Embryo (2)
Gastric adenocarcinoma cell (2)
Anther (1)
Blastoderm (1)
Blood cell (1)
Blood serum (1)
Bone marrow (1)
Colon (1)
Embryonic stem cell (1)
Esophageal squamous epithelium (1)
Heart (1)
Kidney (1)
Leaf (1)
Lung (1)
Mammary gland (1)
Oocyte (1)
Prostate gland (1)
Root (1)
Short term hematopoietic stem cell (1)
Small intestine (1)
Spleen (1)
Stem cell (1)
Whole body (1)

Disease

Colon cancer (2)
Adult hepatocellular carcinoma (1)
Brain cancer (1)
Breast cancer (1)
Esophageal cancer (1)
Gastric adenocarcinoma (1)
Liver cancer (1)
Mastitis (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (27)
Mass spectrometry (11)
Gel-based experiment (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (2)
SWATH MS (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - negative - reverse phase (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
Q Exactive (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Bruker maXis ESI Quadrupole TOF (1)
LTQ Orbitrap Elite (1)
Orbitrap Eclipse (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - (1)

Publication Date

2023 (24)
2020 (17)
2022 (17)
2024 (14)
2025 (12)
2019 (10)
2021 (8)
2018 (5)
2016 (4)
2017 (4)
2014 (3)
2013 (3)
2012 (3)
2015 (2)
2010 (2)
2026 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:17368 (6)
CHEBI:17568 (5)
CHEBI:16737 (5)
CHEBI:17191 (5)
CHEBI:17748 (4)
CHEBI:15428 (4)
CHEBI:16566 (4)
CHEBI:35581 (4)
CHEBI:17750 (4)
CHEBI:17203 (4)
CHEBI:15971 (4)
CHEBI:30772 (4)
CHEBI:16643 (4)
CHEBI:17895 (4)
CHEBI:17295 (4)
CHEBI:16828 (4)
CHEBI:132543 (3)
CHEBI:18723 (3)
CHEBI:28997 (3)
CHEBI:140947 (3)
CHEBI:17992 (3)
CHEBI:17169 (3)
CHEBI:140940 (3)
CHEBI:36036 (3)
CHEBI:140943 (3)
CHEBI:16424 (3)
CHEBI:15765 (3)
CHEBI:77761 (3)
CHEBI:16755 (3)

Metabolite Name

Benzaldehyde (4)
Citric acid (4)
Palmitic acid (4)
Sucrose (4)
Geranylgeranyl-PP (3)
Phenylacetaldehyde (3)
Chenodeoxycholic acid (3)
Toluene (3)
Uracil (3)
Melibiose (3)
D-4'-Phosphopantothenate (3)
L-Lysine (3)
Benzyl alcohol (3)
Benzoic acid (3)
L-Arginine (3)
L-Histidine (3)
L-Glutamic acid (3)
Indole (3)
Choline (3)
Stearic acid (3)
Adenosine (3)
Oleic acid (3)
Linoleic acid (3)
L-Tryptophan (3)
Dodecanoic acid (3)
Azelaic acid (3)
Myristic acid (3)
Thymidine (3)
Trehalose (3)
Creatinine (3)

Study type

RNA-seq of coding RNA (7)
Transcription profiling by array (6)
ChIP-seq (2)
RNA-seq of non coding RNA (1)

Release Date

2025 (492)
2024 (398)
2022 (365)
2023 (320)
2021 (316)
2020 (212)
2019 (124)
2018 (111)
2017 (95)
2016 (74)
2026 (62)
2015 (52)
2014 (37)
2013 (23)
2012 (21)
2011 (11)
2010 (8)
2008 (8)
2009 (7)
2007 (5)
2006 (2)
2005 (2)
2004 (2)

Lab affiliation

Center for Excellence in Molecular Cell Science, CAS (3)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
University of Science and Technology of China (2)
westlake.edu.cn (2)
Associate Professor College of Pharmacy, Kyungpook National University (1)
Changchun Veterinary Research Institute (1)
Cheeloo Medical College, Shandong University, Jinan, Shandong, China (1)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (1)
College of Forestry and Horticulture, Xinjiang Agricultural University；Institute of Horticulture Crops, Ningxia Academy of Agriculture and Forestry Sciences； (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, China (1)
Department of Chemistry, National University of Singapore, Singpaore (1)
Department of Chemistry, The University of Hong Kong (1)
Department of Emergency Medicine, Xinqiao Hospital, Army Medical University, 83 Xinqiao Street, Shapingba District, Chongqing 400037, China (1)
Department of Gastroenterology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China (1)
Hebei university (1)
Hu Bei province,enshi Acandemy of Agricutural sciences (1)
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, National Key Laboratory of Medical Molecular Biology & Department of Immunology, No 5 Dongdan Santiao, Dongcheng district, Beijing 100005, China (1)
Jinan University,China (1)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China (1)
Nanjing Medical University (1)
National Institute of Biological Sciences, Beijing, Beijing, China. (1)
Northwest Agriculture and Forestry University, Yangling District, Xianyang City, Shaanxi Province, China (1)
Peking University Cancer Hospital & Institute. (1)
Research Center for Blood Engineering and Manufacturing, Cyrus Tang Medical Institute, National Clinical Research Center for Hematologic Diseases, Collaborative Innovation Center of Hematology, Jiangsu Institute of Hematology, Institute of Blood and Marrow Transplantation, The First Affiliated Hospital of Soochow University, State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou, China. (1)
SIMM (1)
Shengjing hospital of China Medical University (1)
State Key Laboratory of Crop Biology, Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong 271018, China (1)
State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & School of Basic Medicine Peking Union Medical College, Beijing 100005, China (1)
State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & School of Basic Medicine Peking Union Medical College, Beijing 100005, China (1)

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MR-1 nitrate sample to fumarate sample

One of the most striking observations in the S. oneidensis genome regarding nitrate respiration is that napC is missing and nrfBCD is degenerated. To gain insights into candidate genes encoding the protein(s) in place of NapC and NrfBCD function, i.e., delivering electrons to NapA and NrfA, transcri...

ORGANISM(S): Shewanella oneidensis MR-1

2010-05-19 | E-GEOD-11198 | biostudies-arrayexpress

Modulation of the Gut Microbiota by Shen-Yan-Fang-Shuai Formula Improves Obesity Induced by High-Fat Diets.

Not available

S-EPMC7779482 | biostudies-literature

Sorafenib-based combined molecule targeting in treatment of hepatocellular carcinoma.

Not available

S-EPMC4641124 | biostudies-literature

Lewis (y) antigen overexpression increases the expression of MMP-2 and MMP-9 and invasion of human ovarian cancer cells.

Not available

S-EPMC3000092 | biostudies-literature

Chevrette et al 2019 Insect-associated Streptomyces

Paper title: The antimicrobial potential of Streptomyces from insect microbiomes. Author list: Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo ...

ORGANISM(S): Pseudonocardia Kitasatospora Streptomyces Gordonia <actinomycete>

2019-12-18 | MSV000084723 | MassIVE

Ypsilandrosides U-Y, five new steroidal saponins from Ypsilandra thibetica.

Not available

S-EPMC9068850 | biostudies-literature

Irisin enhances chondrogenic differentiation of human mesenchymal stem cells via Rap1/PI3K/AKT axis.

Not available

S-EPMC9351134 | biostudies-literature

Microarray skeletal muscle miR-499 overexpressing mice

This experiment was conducted to identify target genes of the microRNA-499 in skeletal muscle of transgenic mice that overexpressed miR-499. The following abstract from the submitted manuscript describes the major findings of this work. Coupling of mitochondrial function and skeletal muscle f...

ORGANISM(S): Mus musculus

2016-09-03 | E-GEOD-72581 | biostudies-arrayexpress

Tricistronic hepatitis C virus subgenomic replicon expressing double transgenes.

Not available

S-EPMC4277965 | biostudies-literature

Nocturnal oxygen saturation is associated with all-cause mortality: a community-based study.

Not available

S-EPMC10835782 | biostudies-literature