Gibson L L - OmicsDI

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Transcriptomics (84)
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prokaryotic environmental samples (3)
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Organisms

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Disease

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Mass Spectrometry (24)
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Publication Date

2013 (18)
2010 (17)
2015 (16)
2014 (14)
2008 (10)
2012 (8)
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2011 (2)
2005 (1)
2018 (1)
2007 (1)

CHEBI ID

CHEBI:17568 (4)
CHEBI:16359 (3)
CHEBI:16761 (3)
CHEBI:16856 (3)
CHEBI:17361 (3)
CHEBI:17859 (3)
CHEBI:22652 (3)
CHEBI:24813 (3)
CHEBI:24898 (3)
CHEBI:27266 (3)
CHEBI:28865 (3)
CHEBI:100147 (2)
CHEBI:10137 (2)
CHEBI:1157 (2)
CHEBI:119573 (2)
CHEBI:134458 (2)
CHEBI:138868 (2)
CHEBI:139134 (2)
CHEBI:143237 (2)
CHEBI:143243 (2)
CHEBI:143251 (2)
CHEBI:145970 (2)
CHEBI:15318 (2)
CHEBI:15366 (2)
CHEBI:15428 (2)
CHEBI:15435 (2)
CHEBI:15468 (2)
CHEBI:15553 (2)
CHEBI:15561 (2)
CHEBI:15579 (2)

Metabolite Name

Ascorbate (3)
Glutathione (3)
1-Isomangostin (2)
12-Hydroxydodecanoic acid (2)
12-Ketodeoxycholic acid (2)
13-OxoODE (2)
2,4-Dihydroxyacetophenone 5-sulfate (2)
2-Hydroxyethanesulfonate (2)
3-Dehydroquinate (2)
3-Oxododecanoic acid (2)
3-Oxotetradecanoyl-CoA (2)
6-Hydroxymelatonin (2)
ADP (2)
AMP (2)
Amoxicillin (2)
Amprenavir (2)
Ascorbic acid-2-sulfate (2)
Biliverdin (2)
Buclizine (2)
Cholesterol sulfate (2)
Citrate (2)
Cucurbic acid (2)
Cysteineglutathione disulfide (2)
Cysteinyl-Hydroxyproline (2)
D-Urobilinogen (2)
Dehydroepiandrosterone sulfate (2)
Delavirdine (2)
Dodecanedioic acid (2)
Dodecanoic acid (2)
Doxazosin (2)

IsPrivate

False (1)

First Public Date

2025 (1)

Classification

bacteria (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (12)
Comparative genomic hybridization by array (5)
ChIP-seq (3)
DNA-seq (3)
Methylation profiling by array (3)
Transcription profiling by RT-PCR (1)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (199)
2021 (184)
2024 (173)
2023 (158)
2025 (148)
2020 (126)
2019 (125)
2015 (84)
2018 (74)
2017 (71)
2016 (69)
2014 (64)
2013 (60)
2011 (49)
2012 (48)
2010 (46)
2026 (27)
2009 (25)
2008 (19)
2007 (7)
2006 (4)
2005 (2)
2003 (2)
2001 (2)
1998 (2)
2004 (1)
2002 (1)
2000 (1)

Lab affiliation

Cornell University Department of Microbiology (3)
School of Biotechnology and Biomolecular Sciences The University of NSW Sydney NSW 2052 Australia (2)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
DIRECTOR, THE PICOWER INSTITUTE FOR LEARNING AND MEMORYAT MIT PICOWER PROFESSOR OF NEUROSCIENCE, DEPARTMENT OF BRAIN AND COGNITIVE SCIENCES SENIOR ASSOCIATE MEMBER, BROAD INSTITUTE (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. (1)
Department of Chemistry, Imperial College London, London, SW7 2AZ, United Kingdom. (1)
Department of Chemistry, Stanford University (1)
Department of Chemistry, University of Washington, Seattle, Washington 98195, United States (1)
Department of Microbiology-Immunology, University of North Carolina at Chapel Hill, NC, (1)
Fondazione Human Technopole (1)
INRA , CNRS , Université de Nice, Sophia Antipolis, France (1)
IRIC-Université de Montréal (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge UK (1)
Professor of Biochemistry, Faculty of Biology, Medicine & Health, Wellcome Trust Centre for Cell-Matrix Research, University of Manchester, United Kingdom (lab head) (1)
Proteomics (1)
Proteomics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY 14853, USA (1)
School of Biotechnology and Biomolecular Sciences, The University of NSW, Sydney NSW 2052 Australia (1)
St. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria. (1)
University of British Columbia (Okanagan Campus); Biology Dept (1)
Washington University, Department of Medicine, Division of Pulmonary and Critical Care (1)

Tags

xref:PubMed:41041610 (1)
pathogen:bacterium (1)
pathogen (1)

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Pharmacologic inhibition of L-tyrosine degradation ameliorates cerebral dopamine deficiency in murine phenylketonuria (PKU).

Not available

S-EPMC4119869 | biostudies-literature

Interplay between intestinal alkaline phosphatase, diet, gut microbes and immunity.

Not available

S-EPMC4229529 | biostudies-literature

A mouse model of the most aggressive subgroup of human medulloblastoma [Mouse430_2]

Mouse models of medulloblastoma are compared to human subgroups through microarray expression and other measures This study contrasts mouse medullablastomas from a range of mouse genetic models. For Shh-type medulloblastoma [dka001-005, 009, 033 and 034] and [dka050-057], spontaneous medulloblastom...

ORGANISM(S): Mus musculus

2012-02-29 | E-GEOD-33199 | biostudies-arrayexpress

Cytochrome P450–catalyzed L-tryptophan nitration in thaxtomin phytotoxin biosynthesis.

Not available

S-EPMC3522571 | biostudies-literature

Transcriptional dosage compensation in heterozygotes for deletions in Drosophila

We measured gene expression in two isogenic Drosophila lines heterozygous for long deletions. We find that a majority of genes are at least partially compensated at transcription for Â½-fold dosage. The degree of compensation does not vary among functional classes of genes. Compensation for deletion...

ORGANISM(S): Drosophila melanogaster

2010-06-20 | E-GEOD-14799 | biostudies-arrayexpress

Rapid and Effective Generation of Nanobody Based CARs using PCR and Gibson Assembly.

Not available

S-EPMC7037261 | biostudies-literature

Pyramiding stacking of multigenes (PSM): a simple, flexible and efficient multigene stacking system based on Gibson assembly and gateway cloning.

Not available

S-EPMC10668122 | biostudies-literature

Rapid Construction of a Replication-Competent Infectious Clone of Human Adenovirus Type 14 by Gibson Assembly.

Not available

S-EPMC6213080 | biostudies-literature

Intermittent sprint performance in the heat is not altered by augmenting thermal perception via L-menthol or capsaicin mouth rinses.