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TranscriptomicsHi-C in the Drosophila wild-type embryos at 2-4h after egg-laying
Hi-C was performed on 2 biological replicates of wild-type Drosophila embryos at 2-4 hrs after egg-laying. Each library was first checked on MiSeq and then deeply sequenced on HiSeq 2000 (4 lanes for each biological replicate)
ORGANISM(S): Drosophila melanogaster 
2023-05-14 | E-MTAB-12070 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Twist protein during embryonic development in Drosophila
Genomewide mapping of Drosophila Twist protein binding during embryonic development. Two consecutive timepoints (2-4 and 4-6 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Twist protein. Additionally, preimmune-serum was use...
ORGANISM(S): Drosophila melanogaster 
2007-03-28 | E-TABM-159 | biostudies-arrayexpress
TranscriptomicsHi-C in D. melanogaster carrying second (CyO) and third (TM3) balancer chromosomes
We used a Drosophila melanogaster line (a "double balancer") carrying balancer chromosomes for both the second (CyO) and third (TM3) chromosomes, and crossed it to an isogenic wild-type "virginizer" line. Trans-heterozygous adults from the F1 generation were further crossed to the wild-type parenta...
ORGANISM(S): Drosophila melanogaster 
2019-04-24 | E-MTAB-7512 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of D. melanogaster Twist homozygous mutants vs. wildtype embryos at various developmental stages
Expression profiling of Drosophila twist homozygous mutant embryos in a timecourse of embryogenesis. Four one-hour timepoints were assayed (4-8 hrs after egg laying). Homozygous mutant embryos were collected using GFP-activated embryo sorting at the same time as stage-matched wildtype controls. Four...
ORGANISM(S): Drosophila melanogaster 
2007-03-28 | E-TABM-162 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of D.melanogaster twist homozygous mutants vs wildtype embryos at developmental stages
Expression profiling of Drosophila twist homozygous mutant embryos in a timecourse of embryogenesis. Four one-hour timepoints were assayed (4-8 hrs after egg laying). Homozygous mutant embryos were collected using GFP-activated embryo sorting at the same time as stage-matched wildtype controls. Four...
ORGANISM(S): Drosophila melanogaster 
2007-03-28 | E-TABM-161 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of D.melanogaster homozygous Toll10B gain of function mutants vs. wild type embryos at developmental stages 5-7, 8-10 and 10-12 hours
Expression profiling of Drosophila Toll10B homozygous mutant embryos (carrying a dominant active form of the Toll transmembrane receptor) in a timecourse of embryogenesis. Three one-hour timepoints were assayed (3-6 hrs after egg laying). Homozygous mutant embryos were collected using GFP-activated ...
ORGANISM(S): Drosophila melanogaster 
2007-03-28 | E-TABM-160 | biostudies-arrayexpress
TranscriptomicsChIP-chip of Drosophila Polycomb group proteins Pho and dSfmbt (PhoRC) in embryos and larvae
Analysis of binding profile of the Polycomb group proteins Pho and dSfmbt (PhoRC complex) in Drosophila melanogster at two developmental stages (embryos and larvae).
ORGANISM(S): Drosophila melanogaster 
2008-11-06 | E-TABM-525 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Drosophila to identify pMad, dTcf, Doc, Pnr and Slp1 proteins binding during embryonic development
Genomewide mapping of Drosophila melanogaster pMad, dTcf, Doc, Pnr and Slp1 protein binding during embryonic development. Two consecutive timepoints (4-6 and 6-8 hrs after egg-laying) were assayed in two independent repeats each. Additionally the respective preimmune-serum was used as a control for ...
ORGANISM(S): Drosophila melanogaster 
2012-02-03 | E-TABM-1184 | biostudies-arrayexpress
TranscriptomicsD. melanogaster gene expression profiling time course of Snail mutants
Expression profiling of Drosophila melanogaster halo[AJ] snail[Df(2L)TE116GW11] and halo[AJ] sna[V2] homozygous mutant embryos at two timepoints of embryogenesis. Embryos were manually sorted and assayed at cellularisation stage (stage 5 to early stage 6) and at gastrulation stage (late stage 6 to e...
ORGANISM(S): Drosophila melanogaster 
2014-01-10 | E-MTAB-1598 | biostudies-arrayexpress
TranscriptomicsTrim24 knock down in the 2i-state of the mouse ES cells
Differentially expressed genes were determined by single-end sequencing (stranded protocol) following Trim24 and/or p53 knock down in the mouse ES cells grown in 2i media. Triplicates were generated for treatment and control samples but for p53 knock down (duplicate).
ORGANISM(S): Mus musculus 
2017-11-08 | E-MTAB-4893 | biostudies-arrayexpress
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