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TranscriptomicsRNA-seq of Plasmodium vivax derived from clinical isolates
This project contains RNA-sequencing reads of Plasmodium vivax derived directly from clinical patients. Here, we aim to characterize the gene expression patterns in patients with various parasite compositions. Patients (n=10) were recruited from two malaria endemic areas in Thailand. Ten RNA samples...
ORGANISM(S): Homo sapiens 
2019-06-30 | E-MTAB-6753 | biostudies-arrayexpress
ProteomicsUntargeted Metabolomics and Lipidomics Reveal Complex Pathways Spurred by Activation of Acid Resistance Mechanisms in Escherichia coli
Escherichia coli (E. coli) is a ubiquitous group of bacteria that can be either commensal gut microbes or enterohemorrhagic food-borne pathogens. Regardless, both forms must survive acidic environments in the stomach and intestines to reach and colonize the gut, a process that partially relies on am...
ORGANISM(S): Escherichia Coli K-12 (ncbitaxon:83333) 
2022-07-27 | MSV000089994 | MassIVE
MetabolomicsGNPS - Untargeted Metabolomics and Lipidomics Reveal Complex Pathways Spurred by Activation of Acid Resistance Mechanisms in Escherichia coli
Escherichia coli (E. coli) is a ubiquitous group of bacteria that can be either commensal gut microbes or enterohemorrhagic food-borne pathogens. Regardless, both forms must survive acidic environments in the stomach and intestines to reach and colonize the gut, a process that partially relies on am...
ORGANISM(S): Escherichia Coli K-12 (ncbitaxon:83333) 
2022-07-27 | MSV000089994 | GNPS
ProteomicsLoss of function variants in SAXO6, encoding a microtubule inner protein of photoreceptor cilia, causes a late-onset retinal dystrophy
Over 500 genes have been linked to various forms of inherited retinal diseases (IRDs), a class of Mendelian conditions affecting the survival and function of rod and cone photoreceptors and leading in most instances to progressive visual loss. Yet, some patients still lack a clear genetic diagnosis,...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) 
2026-01-28 | MSV000100624 | MassIVE
Transcriptomicscis sequence effects on gene expression
Sequence and transcriptional variability within and between individuals are typically studied independently. The joint analysis of sequence and gene expression variation provides insight into biological mechanisms that underlie gene regulation and function. We investigated the role of sequence varia...
ORGANISM(S): Homo sapiens 
2008-04-09 | E-GEOD-8394 | biostudies-arrayexpress
ProteomicsAn AI-ready phosphorylation meta-analysis for Saccharomyces cerevisiae.
We, the PTMeXchange Consortium, present a meta-analysis of eight high-quality data sets to map 56,694 phosphosites in brewer's yeast (Saccharomyces cerevisiae) using strict control for false identifications. Each site has been classified into the Gold-Silver-Bronze (GSB) categories depending on the ...
ORGANISM(S): Saccharomyces cerevisiae 
2025-12-16 | PXD071918 | Pride
UnknownEvaluation of DNA Extraction Methods for Microbial Community Profiling in Deadwood Decomposition.
Not available
S-EPMC11561137 | biostudies-literature
UnknownA wearable aptamer nanobiosensor for non-invasive female hormone monitoring.
Not available
S-EPMC10954395 | biostudies-literature
MetabolomicsCharacterisation of monophasic solvent-based tissue extractions for detection of polar metabolites and lipids applying UHPLC-MS clinical metabolic phenotyping assays

Metabolic phenotyping of tissues uses metabolomics and lipidomics to measure the relative polar and non-polar (lipid) metabolite levels in biological samples. This approach aims to understand disease biochemistry and identify biochemical markers of disease. Sample preparation methods must be repr...

2020-09-28 | MTBLS1707 | MetaboLights
UnknownA wireless patch for the monitoring of C-reactive protein in sweat.
Not available
S-EPMC10592261 | biostudies-literature
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