Gomez R R - OmicsDI

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Unknown (8007)
Proteomics (114)
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Mus musculus (68)
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Organisms

Mus musculus (3)

Repository

biostudies-arrayexpress (120)
pride (93)
EGA (45)
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Mass Spectrometry (93)
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Publication Date

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2013 (16)
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2020 (14)
2011 (13)
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2015 (11)
2010 (11)
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2016 (8)
2009 (8)
2019 (8)
2017 (6)
2007 (3)
2008 (2)

UNIPROT ID/AC

O75460 (1)
O75807 (1)
P05198 (1)
P17861 (1)
P18848 (1)
P18850 (1)
P35638 (1)
Q99941 (1)
Q9NZJ5 (1)

CHEBI ID

CHEBI:18237 (5)
CHEBI:30769 (5)
CHEBI:15354 (4)
CHEBI:15366 (4)
CHEBI:15428 (4)
CHEBI:15891 (4)
CHEBI:16449 (4)
CHEBI:16811 (4)
CHEBI:22660 (4)
CHEBI:24898 (4)
CHEBI:25017 (4)
CHEBI:25094 (4)
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CHEBI:28044 (4)
CHEBI:28300 (4)
CHEBI:30915 (4)
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CHEBI:15741 (3)
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CHEBI:18012 (3)
CHEBI:18066 (3)
CHEBI:18132 (3)
CHEBI:18186 (3)

Metabolite Name

Choline (3)
Creatine (3)
Formate (3)
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Isoleucine (3)
Lactate (3)
UDP-glucose (3)
2-Oxoglutarate (2)
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AMP (2)
ATP (2)
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Creatinine (2)
Ethanol (2)
Fumarate (2)
Glutamate (2)
Histidine (2)
Isobutyrate (2)
Leucine (2)
Lysine (2)
Methanol (2)
Methionine (2)
NAD (2)

First Public Date

2024 (2)
2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Systems Biology Ireland, University College Dublin (5)
EDyP (4)
Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, UK, DD1 5EH, UK (3)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (3)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
1 Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. 2 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
Agroforestry and Plant Biochemistry, Proteomics and Systems Biology. Departament of Biochemistry and Molecular Biology. University of Cordoba. Spain (1)
Assistant Professor at Biomolecular Mass Spectrometry and Proteomics, Utrecht University Proteomics facility anager at Netherlands Cancer Institute (1)
Associate Professor Dept. of Pathology and Laboratory Medicine HSRF 218, University of Vermont Larner College of Medicine Burlington, Vermont, 05405, USA (1)
Biognosys AG (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, UK (1)
Cancer Research UK Scotland Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD UK School of Cancer Sciences, University of Glasgow, Garscube Estate, Switchback Road, Glasgow G61 1QH, UK (1)
Cancer Research UK Scotland Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK School of Cancer Sciences, University of Glasgow, Garscube Estate, Switchback Road, Glasgow G61 1QH, UK (1)
Cell Cycle, Department of Basic Medical Sciences, Institut de Recerca Biomèdica de Lleida (IRBLLEIDA), University of Lleida, Lleida, Spain. (1)
Center for Genomic Regulation (CRG) University Pompeu Fabra (UPF) (1)
Center for Reproductive Evolution, Biology Department, Syracuse University, Syracuse, NY, 13244, USA (1)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Centre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, SA, Australia Adelaide Medical School, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA, Australia (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Centre of Excellence in New Target Discovery (CENTD), Butantan Institute, Sao Paulo, Brazil. (1)
Clinical Proteomics (1)
College of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates. (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Departamento de Microbiología y Parasitología, Facultad de Medicina, Universidad Nacional Autónoma de México, Ciudad Universitaria, Ciudad de México 04510, Mexico; rgarc@bq.unam.mx (1)
Department of Biochemistry & Pharmacology, University of Melbourne (1)
Department of Cellular Biology and Immunology, Lab 201, IPBLN-CSIC, Granada, Spain. (1)
Department of Chemistry, Scripps Research (1)
Department of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA (1)
Department of Clinical Chemistry and Transfusion Medicine at Institute of Biomedicine, SU Sahlgrenska 413 45 Gothenburg, Sweden (1)

IsPrivate

False (2)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)

Study type

Transcription profiling by array (83)
ChIP-seq (10)
RNA-seq of coding RNA (10)
Methylation profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Animal - High-throughput sequencing (2)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
RNA-seq of non coding RNA from single cells (1)
Human - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1105)
2023 (988)
2021 (968)
2025 (897)
2024 (881)
2020 (686)
2019 (491)
2018 (382)
2017 (324)
2016 (265)
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2012 (134)
2013 (124)
2011 (99)
2010 (67)
2009 (57)
2008 (22)
2007 (18)
2006 (10)
2004 (10)
2002 (4)
2005 (2)
2003 (2)
2001 (2)
2000 (2)
1999 (2)
1997 (1)

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HowDirty: An R package to evaluate molecular contaminants in LC-MS experiments

Contaminants derived from consumables, reagents, and sample handling often negatively affect LC-MS data acquisition. In proteomics experiments, they can markedly reduce identification performance, reproducibility, and quantitative robustness. Here, we introduce a data analysis workflow combining MS1...

ORGANISM(S): Homo Sapiens (human)

2023-10-12 | PXD044032 | JPOST Repository

Diedrichs2018 - A data-entrained computational model for testing the regulatory logic of the vertebrate unfolded protein response

A data-entrained computational model for testing the regulatory logic of the vertebrate unfolded protein response This model is described in the article: A data-entrained computational model for testing the regulatory logic of the vertebrate unfolded...

2024-09-02 | BIOMD0000000703 | BioModels

DICER ribonuclease removes harmful R-loops.

Not available

S-EPMC11034902 | biostudies-literature

Statistical data driven approach of COVID-19 in Ecuador: R 0 and R t estimation via new method.

Not available

S-EPMC7811040 | biostudies-literature

Genetic and epidemiologic assessment of mandibular cortical indices and bone mineral density in peripubertal children: the Generation R study.

Not available

S-EPMC12644194 | biostudies-literature

The S-phase checkpoint is required to respond to R-loops accumulated in THO mutants.

Not available