Gomez S S - OmicsDI

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Unknown (9545)
Proteomics (144)
Transcriptomics (116)
Genomics (72)
Metabolomics (17)

Organisms

Homo sapiens (158)
Mus musculus (62)
Arabidopsis thaliana (15)
Rattus norvegicus (9)
Saccharomyces cerevisiae (6)
Trypanosoma cruzi strain CL Brener (6)
Bacteria (4)
Danio rerio (3)
Aspergillus fumigatus (2)
Mycobacterium tuberculosis (2)
Sus scrofa (2)
Leishmania major strain Friedlin (1)
Acidiphilium sp. PM (1)
Urochloa decumbens (1)
Mytilus edulis (1)
Fragaria x ananassa (1)
Macaca mulatta (1)
Pseudomonas extremaustralis (1)
Mycobacterium tuberculosis CDC1551 (1)
Medicago truncatula (1)
Listeria monocytogenes (1)
Citrus sinensis (1)
Oryza sativa (1)
Anopheles gambiae (1)
Aedes aegypti (1)
Mesocricetus auratus (1)
Bos taurus (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
cellular organisms (1)

Organisms

Mus musculus (3)
Pseudomonas aeruginosa PAO1 (1)
Saccharomyces cerevisiae (1)
Solanum lycopersicum (1)

Repository

biostudies-arrayexpress (132)
pride (119)
EGA (48)
MassIVE (15)
MetaboLights (15)
jPOST (8)
ENA (6)
geo (2)
GNPS (2)
PAXDB (2)

Tissue

Cell culture (20)
Epithelial cell (8)
Blood plasma (6)
Brain (6)
T cell (6)
Blood (4)
Embryonic stem cell (4)
Cerebrospinal fluid (3)
Fibroblast (3)
HeLa cell (3)
Urine (3)
B cell (2)
Blood cell (2)
Breast (2)
Embryo (2)
Lung (2)
Lymph node (2)
Permanent cell line cell (2)
Photosynthetic cell (2)
Platelet (2)
Skin (2)
Ascites (1)
Astrocyte (1)
Blood serum (1)
Breast epithelial cell (1)
Cell suspension culture (1)
Clitoral gland (1)
Dendritic cell (1)
Embryonic kidney cell line (1)
HEK-293T cell (1)

Disease

Chagas disease (6)
Alzheimer's disease (3)
Breast cancer (3)
Cervix carcinoma (2)
Gray platelet syndrome (2)
Neuroblastoma (2)
Uninfected (1)
Basal cell carcinoma (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Charcot-Marie-Tooth disease (1)
Cytochrome-c oxidase deficiency disease (1)
Disease free (1)
Glioblastoma (1)
Idiopathic pulmonary fibrosis (1)
IgA glomerulonephritis (1)
Kidney disease (1)
Neurodevelopmental disorder with or without autism or seizures (1)
Osteoarthritis (1)
Pancreatic cancer (1)
Pulmonary fibrosis (1)
Severe acute respiratory syndrome (1)
Squamous cell carcinoma (1)
Streptococcal meningitis (1)
Systemic lupus erythematosus (1)
Tuberculosis (1)
Type 1 diabetes mellitus (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (119)
Shotgun proteomics (60)
Bottom-up proteomics (35)
Data-dependent acquisition (17)
Affinity purification coupled with mass spectrometry proteomics (13)
Mass spectrometry (7)
Data-independent acquisition (7)
Gel-based experiment (6)
NMR spectroscopy (4)
Mass spectrometry assay (3)
Top-down proteomics (3)
Illumina HiSeq 2000 (2)
HDMSE (2)
SRM/MRM (2)
SWATH MS (2)
ILLUMINA, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)

Instrument Platform

NextSeq 500 (4)
Orbitrap Fusion Lumos (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2000 (3)
Impact (3)
Bruker (3)
Illumina HiSeq 2500 (2)
Thermo Scientific Orbitrap Lumos (2)
Orbitrap Exploris 480 (2)
Gas Chromatography MS - positive (2)
Axon 4000B scanner (1)
ScanArray Lite [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
LTQ FT (1)
MaXis (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive HF-X (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2023 (26)
2012 (25)
2026 (24)
2014 (21)
2025 (21)
2022 (20)
2021 (20)
2015 (18)
2024 (16)
2011 (16)
2016 (13)
2013 (13)
2020 (12)
2017 (10)
2019 (10)
2010 (9)
2018 (8)
2009 (6)
2008 (4)
2007 (3)

UNIPROT ID/AC

1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A16A1_MOUSE (2)
AAAT_MOUSE (2)
AATC_MOUSE (2)
AATM_MOUSE (2)
ABCB7_MOUSE (2)
ABCE1_MOUSE (2)
ABCF1_MOUSE (2)
ABCF2_MOUSE (2)
ACACA_MOUSE (2)
ACAD9_MOUSE (2)
ACADL_MOUSE (2)
ACADM_MOUSE (2)
ACADS_MOUSE (2)
ACBP_MOUSE (2)
ACINU_MOUSE (2)
ACL6A_MOUSE (2)

CHEBI ID

CHEBI:15354 (6)
CHEBI:15428 (6)
CHEBI:18237 (6)
CHEBI:24898 (6)
CHEBI:78320 (6)
CHEBI:15366 (5)
CHEBI:15891 (5)
CHEBI:16449 (5)
CHEBI:16811 (5)
CHEBI:16870 (5)
CHEBI:18132 (5)
CHEBI:22660 (5)
CHEBI:25017 (5)
CHEBI:25094 (5)
CHEBI:27266 (5)
CHEBI:27570 (5)
CHEBI:28044 (5)
CHEBI:28300 (5)
CHEBI:30769 (5)
CHEBI:30915 (5)
CHEBI:15741 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16919 (4)
CHEBI:17287 (4)
CHEBI:17368 (4)
CHEBI:17821 (4)
CHEBI:17822 (4)
CHEBI:18012 (4)
CHEBI:18066 (4)

Metabolite Name

Choline (5)
2-Oxoglutarate (4)
Creatine (4)
Formate (4)
Glutamine (4)
Isoleucine (4)
Lactate (4)
3-Hydroxybutyrate (3)
3-Hydroxyisovalerate (3)
AMP (3)
ATP (3)
Acetate (3)
Alanine (3)
Asparagine (3)
Betaine (3)
Fumarate (3)
Glutamate (3)
Glycine (3)
Histidine (3)
Isobutyrate (3)
Leucine (3)
Lysine (3)
Methionine (3)
NADH (3)
O-Phosphocholine (3)
Phenylalanine (3)
Proline (3)
Serine (3)
Succinate (3)
Taurine (3)

First Public Date

2024 (3)
2026 (1)
2023 (1)
2013 (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (78)
RNA-seq of coding RNA (14)
ChIP-seq (13)
Methylation profiling by array (8)
Methylation profiling by high throughput sequencing (5)
Other (3)
Animal - High-throughput sequencing (2)
ChIP-chip by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA from single cells (1)
Human - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1285)
2023 (1191)
2025 (1148)
2021 (1120)
2024 (1073)
2020 (787)
2019 (568)
2018 (466)
2017 (382)
2016 (333)
2015 (262)
2014 (220)
2026 (187)
2013 (156)
2012 (142)
2011 (114)
2010 (79)
2009 (63)
2008 (33)
2007 (24)
2006 (12)
2005 (9)
2004 (8)
2003 (6)
2000 (4)
2002 (2)
2001 (2)
1999 (1)

Lab affiliation

Instituto de Biotecnología, Grupo de Bioquímica y Parasitología Molecular, Departamento de Parasitología, Universidad de Granada, Granada, Spain. (6)
Departamento de Bioquímica y Biología Molecular. Edificio Severo Ochoa, planta 1, ala Este. Campus de Rabanales. Universidad de Córdoba. 14071-Córdoba. Spain. (5)
EDyP (4)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
Systems Biology Ireland, University College Dublin (2)
1 Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. 2 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
Agroforestry and Plant Biochemistry, Proteomics and Systems Biology. Departament of Biochemistry and Molecular Biology. University of Cordoba. Spain (1)
Assistant Professor at Biomolecular Mass Spectrometry and Proteomics, Utrecht University Proteomics facility anager at Netherlands Cancer Institute (1)
Associate Professor Dept. of Pathology and Laboratory Medicine HSRF 218, University of Vermont Larner College of Medicine Burlington, Vermont, 05405, USA (1)
Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, 97074 Würzburg, Germany (1)
Biological and Environmental Sciences and Engineering Division,King Abdullah University of Science and Technology (1)
Biomedical Center, Chromatin Proteomics Group, Department of Molecular Biology, Faculty of Medicine, Ludwig-Maximilians-Universität München, Großhaderner Strasse 9, 82152 Planegg-Martinsried, Germany. (1)
CECAD Institute, University of Cologne Joseph-Stelzmann-Straße 26 50931 Cologne Germany (1)
CECAD Research Center, University of Cologne (Institute for Genetics) Joseph-Stelzmann-Str. 26 50931 Cologne Germany (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, UK (1)
Cancer Research UK Scotland Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD UK School of Cancer Sciences, University of Glasgow, Garscube Estate, Switchback Road, Glasgow G61 1QH, UK (1)
Cancer Research UK Scotland Institute, Garscube Estate, Switchback Road, Glasgow G61 1BD, UK School of Cancer Sciences, University of Glasgow, Garscube Estate, Switchback Road, Glasgow G61 1QH, UK (1)
Cell Cycle, Department of Basic Medical Sciences, Institut de Recerca Biomèdica de Lleida (IRBLLEIDA), University of Lleida, Lleida, Spain. (1)
Center for Genomic Regulation (CRG) University Pompeu Fabra (UPF) (1)
Center for Reproductive Evolution, Biology Department, Syracuse University, Syracuse, NY, 13244, USA (1)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Centre de Recherches en Cancérologie de Toulouse; INSERM U1037, team 17 PI3K isoforms, signalling and cancerogenesis (1)
Centre for Cancer Biology, University of South Australia and SA Pathology, Adelaide, SA, Australia Adelaide Medical School, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA, Australia (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Centre for Proteome Research, University of Liverpool (1)
Centre of Excellence in New Target Discovery (CENTD), Butantan Institute, Sao Paulo, Brazil. (1)
Clinical Proteomics (1)

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