Gordon A A - OmicsDI

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Unknown (10001)
Transcriptomics (402)
Genomics (280)
Proteomics (93)
Metabolomics (14)
Models (3)
Genomic (3)

Organisms

Homo sapiens (286)
Mus musculus (146)
Saccharomyces cerevisiae (22)
Bacteroides thetaiotaomicron (13)
Arabidopsis thaliana (11)
Bos taurus (10)
Drosophila melanogaster (8)
Rattus norvegicus (8)
Schizosaccharomyces pombe (7)
Danio rerio (6)
Helicobacter pylori (5)
Macaca mulatta (4)
Salmonella enterica (3)
Solanum tuberosum (3)
Canis lupus familiaris (3)
Caenorhabditis elegans (3)
Talaromyces marneffei (2)
Methanobrevibacter smithii ATCC 35061 (2)
Bifidobacterium longum (2)
Zea mays (2)
Mycobacterium tuberculosis (2)
Staphylococcus aureus (2)
Escherichia coli (2)
Gallus gallus (2)
Bacteria (2)
Citrobacter rodentium (2)
Bacteroides ovatus (1)
Methanobrevibacter smithii (1)
Populus x canadensis (1)
Tetraodon nigroviridis (1)

Organisms

Mus musculus (12)
Homo sapiens (11)
Bacteroides thetaiotaomicron (10)
Bacteria (2)
Sagittula stellata E-37 (1)
Maribacter sp. HTCC2170 (1)
Croceibacter atlanticus HTCC2559 (1)
Synechococcus sp. WH 7805 (1)
Prochlorococcus marinus str. MIT 9303 (1)
Erythrobacter litoralis HTCC2594 (1)
Oceanicola granulosus HTCC2516 (1)
Pseudooceanicola batsensis HTCC2597 (1)
Oceanicaulis sp. HTCC2633 (1)
Idiomarina baltica OS145 (1)
Erythrobacter sp. NAP1 (1)
Marinobacter sp. F02 (1)
Synechococcus sp. RS9916 (1)
Sulfitobacter sp. EE-36 (1)
Aurantimonas manganoxydans SI85-9A1 (1)
Leeuwenhoekiella blandensis MED217 (1)
Synechococcus sp. Eum14 (1)
Synechococcus sp. RS9917 (1)
Prochlorococcus marinus str. MIT 9211 (1)
Psychroflexus torquis ATCC 700755 (1)
Photobacterium angustum S14 (1)
Rhodobacteraceae bacterium HTCC2083 (1)
Salipiger bermudensis HTCC2601 (1)
Prochlorococcus marinus str. AS9601 (1)
Janibacter sp. HTCC2649 (1)
Bacillus sp. NRRL B-14911 (1)

Repository

biostudies-arrayexpress (440)
ENA (156)
EGA (80)
pride (65)
MassIVE (21)
MetaboLights (13)
geo (6)
dbGaP (3)
jPOST (3)
BioModels (2)
PeptideAtlas (2)
GNPS (1)
iProX (1)
PanoramaPublic (1)
PMR (1)

Tissue

Cell culture (15)
Blood plasma (5)
T cell (4)
Epithelial cell (3)
Macrophage (3)
Permanent cell line cell (3)
Blood (2)
Brain (2)
Colon epithelial cell (2)
Liver (2)
Lung (2)
Podocyte (sensu Diptera) (2)
Spleen (2)
Female Reproductive System (1)
Ovary (1)
Animal (1)
Blood serum (1)
Bodily fluid (1)
Breast cancer cell (1)
Calu-3 cell (1)
Cell line cell (1)
Cerebrospinal fluid (1)
Colon (1)
Early embryonic cell (1)
Ewing's sarcoma cell (1)
Extracellular matrix constituent secretion (1)
Eye (1)
Gastric adenocarcinoma cell (1)
Gill (1)
Hepatocyte (1)

Disease

Normal (4)
Colon cancer (3)
Ovarian cancer (2)
Disease free (2)
Liver cancer (2)
Alzheimer's disease (1)
Cervical carcinoma (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Avian influenza (1)
Brain cancer (1)
Conn's syndrome (1)
Fibrolamellar carcinoma (1)
Gastric adenocarcinoma (1)
Glaucoma (1)
Human immunodeficiency virus infectious disease (1)
Leishmaniasis (1)
Lung carcinoma (1)
Malaria (1)
Parasitic infectious disease (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Sjogren's Syndrome (1)
Swine influenza (1)
Tauopathy (1)
Tuberculosis (1)
Ulcerative colitis (1)

Technology Type

Mass Spectrometry (65)
Shotgun proteomics (33)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (10)
Bottom-up proteomics (10)
Data-independent acquisition (9)
Illumina 15K (8)
Data-dependent acquisition (7)
Illumina HiSeq 2000 (5)
DiaPASEF (2)
SWATH MS (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
AB SOLiD System 3.0 (1)
Affymetrix 6.0 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (8)
Illumina HiSeq 2500 (7)
Illumina Genome Analyzer II (4)
Illumina Genome Analyzer IIx (3)
Agilent 2100 Bioanalyzer (2)
Vortex (2)
NextSeq 500 (2)
Ilumina HiScan H166 (1)
Illumina Human-12 v1 Expreesion BeadChip (1)
Small RNA Sample Prep Kit v1.5 (1)
RNAeasy kit (NimbleGen) (1)
Illumina TruSeq stranded ribo-minus Plant (1)
MS10 plates (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
RNeasy Plant Mini Kit & TURBOTM DNase (Ambion) (1)
ERCC Spike-in Kit (Ambion) & Illumina TruSeq Stranded Total RNA with Ribo-Zero Plant kit (1)
Trizol (1)
Illumina iScan (1)
GeneChip IVT Labelling Kit (1)
Qiagen RNeasy Plant Mini Kit (1)
Affymetrix ATH1 Gene Chip (1)
Affymetrix GCS3000 (1)
Helicos HeliScope (1)
GeneChip 3000 7G scanner (Affymetrix) (1)
GentleMACS Dissociator with M tubes (Miltenyi Biotec), QIAzol Lysis Reagent (Qiagen), and RNeasy Microarray Tissue Mini Kit with optional DNase treatment (Qiagen) (1)
Hybridization Cocktails, Mouse Transcriptome 1.0 ST GeneChips, GeneChip Hybridization oven 645 (all Affymetrix) (1)
Bioanalyzer (Agilent), Nanodrop (Thermo Fisher Scientific), and Affymetrix WT Plus Reagent Kit (1)
G2500A Hewlett Packard (1)
Other (1)
Axon GenePix 4000B scanning hardware (1)

Publication Date

2010 (73)
2013 (58)
2014 (56)
2011 (52)
2012 (43)
2015 (33)
2016 (27)
2008 (27)
2007 (23)
2024 (20)
2020 (18)
2019 (16)
2009 (16)
2022 (15)
2021 (15)
2018 (15)
2023 (11)
2026 (9)
2017 (8)
2025 (8)
2005 (6)
2004 (3)
2006 (2)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
P04049 (1)
P05230 (1)
P11362 (1)
P15056 (1)
P28482 (1)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:15756 (5)
CHEBI:78320 (5)
CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:16335 (3)
CHEBI:17234 (3)
CHEBI:17822 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:26271 (3)
CHEBI:28044 (3)
CHEBI:28842 (3)
CHEBI:10642 (2)
CHEBI:142688 (2)
CHEBI:15354 (2)
CHEBI:15891 (2)
CHEBI:16024 (2)
CHEBI:16113 (2)
CHEBI:16411 (2)
CHEBI:16449 (2)
CHEBI:16765 (2)
CHEBI:16811 (2)
CHEBI:16899 (2)
CHEBI:16958 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17268 (2)
CHEBI:17306 (2)
CHEBI:17368 (2)
CHEBI:17561 (2)

Metabolite Name

Adenosine (2)
Glucose (2)
Hexadecanoic acid (2)
Lactate (2)
P-Hydroxyphenylacetic acid (2)
Palmitic acid (2)
Phenylalanine (2)
Proline (2)
Serine (2)
Tyrosine (2)
Xanthine (2)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparagine (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparaginyl-D-asparagine (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5,7-dihydroxyoctadeca-8,10,12-trienoic acid (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienoic acid (1)
1,3-Diaminopropane (1)
1-Methylnicotinamide (1)
10-hydroxystearic acid (1)
13C6-Glucose, 6TMS + oxime (1)
2,2',2''-((2R,5R,8S,11R)-11-((2R,4S,5E,7E,9E)-2,4-dihydroxypentadeca-5,7,9-trien-1-yl)-3,6,9,13,17-pentaoxo-1,4,7,10,14-pentaazacycloheptadecane-2,5,8-triyl)triacetamide (1)
2,3,4,5-Tetrahydroxypentanal (1)
2,5-Furandicarboxylic acid (1)
2-Deoxy-D-glucose + 4TMS + Oxime (1)
2-Hydroxy-2-methylbutyric acid (1)
2-Hydroxy-3-methylvaleric acid (1)
2-Hydroxybutyric acid (1)
2-Hydroxyisobutyric acid (1)
2-Hydroxyisovaleric acid (1)
2-Hydroxyphenylacetic acid (1)
2-Methylhippuric acid (1)

First Public Date

2013 (100)
2014 (28)
2022 (5)
2020 (4)
2021 (3)
2018 (3)
2015 (3)
2026 (2)
2023 (2)
2019 (2)
2017 (2)
2024 (1)
2012 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, United States (2)
Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
The University of Melbourne (2)
Arvinas Operations, Inc., 5 Science Park, 395 Winchester Avenue, New Haven, Connecticut 06511 United States (1)
BS&MS (1)
Bioengineering, School of Pharmacy, University of California San Francisco, USA (1)
Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Cancer Proteomics Lab Department of Molecular Cell Biology Weizmann Institute of Science, Rehovot (1)
Cancer proteomics lab Department of Molecular Cell Biology Weizmann Institute of Science (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Center for Metabolic Disease Research (CMDR) Lewis Katz School of Medicine at Temple University Medical Education and Research Building, Room 1060 3500 N. Broad Street Philadelphia, PA 19140, USA (1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (1)
Chemistry Department, Boston College, USA (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Anschutz Medical Campus, School of Medicine, Aurora, CO 80045 (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Department of Biomedical Engineering, Georgia Institute of Technology and Emory University Department of Chemistry, Emory University (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco, USA (1)
Department of Geoscience, University of Calgary, Calgary Ab, Canada (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG) Institute for Quantitative and Computational Biosciences (QCBio) University of California, Los Angeles (UCLA) (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Department of Pediatrics, Section of Hematology-Oncology Baylor College of Medicine Texas Children's Hospital Houston, Texas (1)
Department of Pharmacology and Chemical Biology, Emory University School of Medicine, Atlanta, GA 30322, USA (1)
Department of Veterinary Biosciences, The University of Melbourne (1)
Discovery Proteomics Facility (1)

IsPrivate

False (2)

Classification

bacteria (16)
viruses (2)
fungi (1)

Modification

15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (254)
RNA-seq of coding RNA (57)
ChIP-seq (42)
ChIP-chip by tiling array (16)
RNA-seq of non coding RNA (14)
Unknown experiment type (12)
Methylation profiling by array (10)
Comparative genomic hybridization by array (9)
ChIP-chip by array (6)
Other (5)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (2)
Animal - High-throughput sequencing (2)
Genotyping by array (2)
Transcription profiling by high throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (1039)
2023 (971)
2021 (963)
2024 (892)
2025 (890)
2020 (830)
2019 (708)
2018 (693)
2017 (583)
2016 (583)
2015 (463)
2014 (338)
2013 (294)
2010 (212)
2011 (210)
2012 (195)
2009 (136)
2026 (130)
2008 (104)
2007 (66)
2006 (32)
2005 (28)
2004 (18)
2003 (16)
2002 (14)
2001 (13)
2000 (5)
1999 (5)
1998 (3)
1997 (2)

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Mapping the biosynthetic pathway of a hybrid polyketide-nonribosomal peptide in a metazoan

Polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) hybrid systems typically use complex protein-protein interactions to facilitate direct transfer of intermediates between these multimodular megaenzymes. In the canal-associated neurons (CANs) of Caenorhabditis elegans, PKS-1 and NR...

2021-06-22 | MTBLS2313 | MetaboLights

A novel targeted/untargeted GC-Orbitrap metabolomics methodology applied to Candida albicans and Staphylococcus aureus biofilms

INTRODUCTION: Combined infections from Candida albicans and Staphylococcus aureus are a leading cause of death in the developed world. Evidence suggests that Candida enhances the virulence of Staphylococcus - hyphae penetrate through tissue bar...

2017-02-20 | MTBLS370 | MetaboLights

Mitochondrial metabolism sustains DNMT3A-R882-mutant clonal haematopoiesis

Somatic DNMT3A R882 codon mutations drive the most common form of clonal haematopoiesis (CH) and are associated with increased acute myeloid leukaemia (AML) risk1,2. Preventing expansion of DNMT3A-R882-mutant haematopoietic stem/progenitor cells (HSPCs) may therefore avert progression to AML. To ide...

2025-02-06 | MTBLS12201 | MetaboLights

Chemocoding as an identification tool where morphological- and DNA-based methods fall short: Inga as a case study

The need for species identification and taxonomic discovery has led to the development of innovative technologies for large-scale plant identification. DNA barcoding has been useful, but fails to distinguish among many species in species-rich plant genera, particularly in tropical regions. Here, we ...

2018-01-22 | MTBLS574 | MetaboLights

PNPLA6 mutations cause Boucher-Neuhauser and Gordon Holmes syndromes as part of a broad neurodegenerative spectrum.

Not available

S-EPMC3891450 | biostudies-literature

Glass Transition Temperatures of Organic Mixtures from Isoprene Epoxydiol-Derived Secondary Organic Aerosol.

Not available

S-EPMC10863072 | biostudies-literature

Canine hereditary ataxia in old english sheepdogs and gordon setters is associated with a defect in the autophagy gene encoding RAB24.

Not available

S-EPMC3916225 | biostudies-literature

Renal sodium and magnesium reabsorption are not coupled in a mouse model of Gordon syndrome.

Not available

S-EPMC6054696 | biostudies-literature

Production of artificial piRNAs in flies and mice

In animals, a discrete class of small RNAs, the piwi-interacting RNAs (piRNAs), guard germ cell genomes against the activity of mobile genetic elements. piRNAs are generated, via an unknown mechanism, from apparently single-stranded precursors that arise from discrete genomic loci, termed piRNA clus...

ORGANISM(S): Mus musculus

2012-01-01 | E-GEOD-32435 | biostudies-arrayexpress

An initial genome-wide investigation of protein-losing enteropathy in Gordon setters: Exploratory observations.

Not available

S-EPMC7747665 | biostudies-literature

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