Gordon D D - OmicsDI

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Unknown (3433)
Transcriptomics (294)
Genomics (130)
Proteomics (56)
Metabolomics (13)

Organisms

Homo sapiens (233)
Mus musculus (100)
Bacteroides thetaiotaomicron (10)
Saccharomyces cerevisiae (10)
Arabidopsis thaliana (8)
Bos taurus (8)
Schizosaccharomyces pombe (7)
Rattus norvegicus (7)
Danio rerio (6)
Drosophila melanogaster (4)
Canis lupus familiaris (4)
Solanum tuberosum (3)
Gallus gallus (3)
Talaromyces marneffei (2)
Methanobrevibacter smithii ATCC 35061 (2)
Bifidobacterium longum (2)
Salmonella enterica (2)
Zea mays (2)
Mycobacterium tuberculosis (2)
Caenorhabditis elegans (2)
Escherichia coli (2)
Bacteroides ovatus (1)
Methanobrevibacter smithii (1)
Bacteria (1)
Populus x canadensis (1)
Tetraodon nigroviridis (1)
Plasmodium berghei ANKA (1)
Acyrthosiphon pisum (1)
Bacteroides thetaiotaomicron VPI-5482 (1)
Escherichia coli ETEC H10407 (1)

Organisms

Mus musculus (4)
Homo sapiens (2)
Acaryochloris sp. CCMEE 5410 (1)

Repository

biostudies-arrayexpress (334)
EGA (75)
pride (35)
MassIVE (16)
MetaboLights (12)
ENA (10)
geo (5)
jPOST (2)
PeptideAtlas (2)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (10)
Blood plasma (2)
Colon epithelial cell (2)
Epithelial cell (2)
Lung (2)
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Calu-3 cell (1)
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Ewing's sarcoma cell (1)
Extracellular matrix constituent secretion (1)
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Peritoneal fluid (1)
Sciatic nerve (1)

Disease

Normal (4)
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Disease free (2)
Alzheimer's disease (1)
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High Grade Ovarian Serous Adenocarcinoma (1)
Avian influenza (1)
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Glaucoma (1)
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Malaria (1)
Severe acute respiratory syndrome (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Sjogren's Syndrome (1)
Swine influenza (1)
Tuberculosis (1)
Ulcerative colitis (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (19)
Mass spectrometry (11)
Illumina 15K (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Illumina HiSeq 2000 (5)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
Data-independent acquisition (2)
SWATH MS (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
AB SOLiD System 3.0 (1)
Affymetrix 6.0 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry assay (1)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 2000 (7)
Illumina Genome Analyzer II (4)
Illumina HiSeq 2500 (4)
Q Exactive Plus (4)
Illumina Genome Analyzer IIx (3)
Vortex (2)
NextSeq 500 (2)
Ilumina HiScan H166 (1)
Illumina Human-12 v1 Expreesion BeadChip (1)
Small RNA Sample Prep Kit v1.5 (1)
RNAeasy kit (NimbleGen) (1)
Illumina TruSeq stranded ribo-minus Plant (1)
MS10 plates (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
RNeasy Plant Mini Kit & TURBOTM DNase (Ambion) (1)
ERCC Spike-in Kit (Ambion) & Illumina TruSeq Stranded Total RNA with Ribo-Zero Plant kit (1)
Trizol (1)
Illumina iScan (1)
GeneChip IVT Labelling Kit (1)
Qiagen RNeasy Plant Mini Kit (1)
Affymetrix ATH1 Gene Chip (1)
Affymetrix GCS3000 (1)
Helicos HeliScope (1)
G2500A Hewlett Packard (1)
Other (1)
Axon GenePix 4000B scanning hardware (1)
To be provided (1)
Ion Torrent Proton (1)
Illumina NovaSeq 6000 (1)
6530A Q-TOF LC/MS (1)

Publication Date

2010 (62)
2013 (44)
2011 (38)
2014 (37)
2012 (33)
2015 (22)
2008 (22)
2007 (20)
2016 (17)
2020 (15)
2021 (14)
2009 (13)
2019 (12)
2018 (12)
2022 (11)
2017 (7)
2023 (7)
2024 (6)
2025 (4)
2026 (4)
2005 (3)
2006 (2)
2004 (2)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1IGU5 (2)
A1L020 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:78320 (5)
CHEBI:15741 (4)
CHEBI:15756 (4)
CHEBI:15428 (3)
CHEBI:17234 (3)
CHEBI:17822 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:26271 (3)
CHEBI:28044 (3)
CHEBI:28842 (3)
CHEBI:142688 (2)
CHEBI:15354 (2)
CHEBI:15891 (2)
CHEBI:16024 (2)
CHEBI:16335 (2)
CHEBI:16411 (2)
CHEBI:16449 (2)
CHEBI:16765 (2)
CHEBI:16811 (2)
CHEBI:16958 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17268 (2)
CHEBI:17306 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:17712 (2)
CHEBI:17750 (2)

Metabolite Name

Glucose (2)
Lactate (2)
P-Hydroxyphenylacetic acid (2)
Palmitic acid (2)
Phenylalanine (2)
Proline (2)
Serine (2)
Tyrosine (2)
Xanthine (2)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparagine (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparaginyl-D-asparagine (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5,7-dihydroxyoctadeca-8,10,12-trienoic acid (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienoic acid (1)
1,3-Diaminopropane (1)
1-Methylnicotinamide (1)
10-hydroxystearic acid (1)
13C6-Glucose, 6TMS + oxime (1)
2,2',2''-((2R,5R,8S,11R)-11-((2R,4S,5E,7E,9E)-2,4-dihydroxypentadeca-5,7,9-trien-1-yl)-3,6,9,13,17-pentaoxo-1,4,7,10,14-pentaazacycloheptadecane-2,5,8-triyl)triacetamide (1)
2,5-Furandicarboxylic acid (1)
2-Deoxy-D-glucose + 4TMS + Oxime (1)
2-Hydroxy-2-methylbutyric acid (1)
2-Hydroxy-3-methylvaleric acid (1)
2-Hydroxybutyric acid (1)
2-Hydroxyisobutyric acid (1)
2-Hydroxyisovaleric acid (1)
2-Hydroxyphenylacetic acid (1)
2-Methylhippuric acid (1)
2-Oxoisocaproic acid (1)
2-deoxy-ribose + 3TMS + Oxime (1)
2-hydroxyglutarate(2-) (1)

First Public Date

2013 (7)
2022 (2)
2017 (1)

Modification

15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (191)
ChIP-seq (41)
RNA-seq of coding RNA (39)
ChIP-chip by tiling array (15)
RNA-seq of non coding RNA (11)
Unknown experiment type (7)
Comparative genomic hybridization by array (6)
Methylation profiling by array (6)
ChIP-chip by array (5)
Other (3)
Transcription profiling by SAGE (2)
Animal - High-throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Genotyping by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (383)
2021 (348)
2023 (341)
2025 (332)
2024 (330)
2020 (260)
2019 (226)
2018 (214)
2016 (166)
2017 (164)
2015 (158)
2013 (142)
2014 (139)
2011 (116)
2010 (110)
2012 (99)
2009 (67)
2008 (47)
2026 (46)
2007 (35)
2006 (13)
2001 (9)
2005 (5)
2002 (5)
2004 (4)
2000 (3)
2003 (1)
1999 (1)
1997 (1)
1996 (1)

Lab affiliation

Senior Director, Dynamic Omics, CGR, One Medimmune Way Gaithersburg, MD 20878 (2)
The University of Melbourne (2)
BS&MS (1)
Bioengineering, School of Pharmacy, University of California San Francisco, USA (1)
Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
Cancer proteomics lab Department of Molecular Cell Biology Weizmann Institute of Science (1)
Center for Diagbostik, Institute of Neuropathology, University Medical Center Hamburg Eppendorf, Germany (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG) Institute for Quantitative and Computational Biosciences (QCBio) University of California, Los Angeles (UCLA) (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Discovery Proteomics Facility (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center Faculty of Medicine Ludwig-Maximilians-University of Munich Großhadernerstr. 9 82152 Planegg-Martinsried (1)
Icahn School of Medicine at Mount Sinai Department of Pharmacological Sciences New York, NY 10029 (1)
Immunology,College of Medicine and Public Health, Flinders University (1)
Institute for Clinical Chemistry and Laboratory Medicine, Vascular Biology Laboratory, University Medical Center Hamburg, Hamburg, Germany (1)
Institute for Clinical Chemistry and Laboratory Medicine, Vascular Biology Laboratory, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Institute of Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, UK (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, AB, Canada. (1)
New England Biolabs (1)
Physiology and Pharmacology McCaig Institute Southern Alberta Mass Spectrometry Core facility University of Calgary (1)
Professor of Microbial Pathogenesis Institute of Integrative Biology Room 308, Biosciences Building, University of Liverpool Crown Street, Liverpool L69 7ZB, United Kingdom (1)
Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA USA J. David Gladstone Institutes, San Francisco, San Francisco, CA, USA Department of Bionengineer and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA (1)

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Gene expression of D. vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions

The gene expression profile of wild-type Desulfovibrio vulgaris grown on cathodic hydrogen, generated at an iron electrode surface with an imposed negative potential of -1.1 V (cathodic protection conditions). The gene expression profile of cells grown on cathodic hydrogen was compared to that of ce...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-05-26 | E-GEOD-10388 | biostudies-arrayexpress

Mitochondrial metabolism sustains DNMT3A-R882-mutant clonal haematopoiesis

Somatic DNMT3A R882 codon mutations drive the most common form of clonal haematopoiesis (CH) and are associated with increased acute myeloid leukaemia (AML) risk1,2. Preventing expansion of DNMT3A-R882-mutant haematopoietic stem/progenitor cells (HSPCs) may therefore avert progression to AML. To ide...

2025-02-06 | MTBLS12201 | MetaboLights

[E-MTAB-442] ChIP-seq of mouse liver with no antibody to provide input sequences for ChIP experiments on C57BJ/6J mice

Odom_mouse_C57BL6J_input This experiment provides chromatin immunoprecipitation input sequences (i.e. no antibody was added during the ChIP protocol), suitable for use as input for ChIP experiments on C57BJ/6J mice. ArrayExpress Release Date: 2011-03-01 Publication Title: Pol III occupancy of tRNA g...

ORGANISM(S): Mus musculus

2011-07-14 | GSE30604 | GEO

Vitamin D is Not a Protective Factor in ALS.

Not available

S-EPMC6495158 | biostudies-literature

D- and L-lactate dehydrogenases during invertebrate evolution.

Not available

S-EPMC2570690 | biostudies-literature

Epidemiology of hepatitis B, C and D in Malawi: systematic review.

Not available

S-EPMC6186098 | biostudies-literature

The metabolic niche of a prominent sulfate-reducing human gut bacterium [3]

Sulfate-reducing bacteria (SRB) colonize the guts of ~50% of humans. We used genome-wide transposon mutagenesis and insertion-site sequencing (INSeq), RNA-Seq, plus mass spectrometry to characterize genetic and environmental factors that impact the niche of Desulfovibrio piger, the most common SRB i...

ORGANISM(S): Mus musculus

2013-07-12 | E-GEOD-48808 | biostudies-arrayexpress

Magnetically driven preparation of 1-D nano-necklaces capable of MRI relaxation enhancement.

Not available

S-EPMC10262958 | biostudies-literature

Nanofabricated Neural Probes for Dense 3-D Recordings of Brain Activity.

Not available

S-EPMC5108031 | biostudies-literature

High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis.

Not available

S-EPMC6068189 | biostudies-literature