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MetabolomicsA systems analysis with “simplified source-sink model” reveals metabolic reprogramming in a pair of source-to-sink organs during early fruit development in tomato by LED light treatments
Tomato (Solanum lycopersicum) is a model crop for studying development regulation and ripening in flesh fruits and vegetables. Supplementary light to maintain the optimal light environment can lead to the stable growth of tomatoes in greenhouses and areas without sufficient daily light integral. Tec...
2018-09-27 | MTBLS699 | MetaboLights
MetabolomicsEndoplasmic reticulum-derived bodies enable a single-cell chemical defense in Brassicaceae plants
Brassicaceae plants have a dual-cell type of chemical defense against herbivory. Here we show a novel single-cell defense involving endoplasmic reticulum (ER)-derived organelles (ER bodies) and the vacuoles. We identify various glucosinolates as endogenous substrates of the ER-body β-glucosidases BG...
2020-02-04 | MTBLS1383 | MetaboLights
TranscriptomicsExpression data from ileum of mice suffered from subchronic and mild social defeat stress
This study aimed to investigate the effects of depression on transcriptome in ileum using a subchronic and mild social defeat stress (sCSDS) model. In addition to exhibiting social deficit and hyperphagia-like behavior, the sCSDS mice keep much more water in their body than control mice. In order to...
ORGANISM(S): Mus musculus 
2016-08-03 | E-GEOD-64004 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of gene expression under different light conditions
The size of tomato fruits are largely dependent on growth conditions. To obtain insights on how light intensity contributes to translocation from a leaf and a fruit, we developed a plant irradiation system based on light-emitting diodes (LEDs) to a leaf. By using this system, we investigated the cha...
ORGANISM(S): Solanum lycopersicum 
2012-05-01 | E-GEOD-35020 | biostudies-arrayexpress
UnknownA SNARE geranylgeranyltransferase essential for the organization of the Golgi apparatus
Not available
S-SCDT-EMBOJ-2019-104120 | biostudies-other
UnknownA microtubule-LUZP1 association around tight junction promotes epithelial cell apical constriction
Not available
S-SCDT-EMBOJ-2020-104712 | biostudies-other
UnknownInvolvement of transcription factor early growth response 4 (EGR4) in lung cancer bone metastasis
Not available
ORGANISM(S): Homo sapiens 
S-ECPF-GEOD-40558 | biostudies-other
TranscriptomicsThe CCR4-NOT Complex Is Implicated in the Viability of Aneuploid Yeasts
To identify the genes required to sustain aneuploid viability, we screened a deletion library of non-essential genes in the fission yeast Schizosaccharomyces pombe, in which most types of aneuploidy are eventually lethal to the cell. Aneuploids remain viable for a period time and can form colonies ...
ORGANISM(S): Schizosaccharomyces pombe 
2012-06-26 | E-GEOD-36454 | biostudies-arrayexpress
TranscriptomicsInvolvement of transcription factor early growth response 4 (EGR4) in lung cancer bone metastasis
EGR4 (early growth response 4), a transcription factor, was previously shown to be up-regulated in lung cancer bone metastasis, compared with its expression in metastasis in other organs, using a multiorgan metastasis model of human small-cell lung cancer cells (SBC-5) in NK cell-depleted SCID mice ...
ORGANISM(S): Homo sapiens 
2013-04-01 | E-GEOD-40558 | biostudies-arrayexpress
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