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TranscriptomicsMicroarray experiment on M. incognita infected and uninfected material in A.thaliana Col-0 plants and A. thaliana ERF6 mutated plants
In this experiment we investigate the transcription profile of M. inocognita infection at the start of the infection and 7 days later in A. thalinana Col-0 plants. This was compared to M. incognita infected material of the plant line erf6-1, a T-DNA insertion mutant in ERF6. The data showed the rol...
ORGANISM(S): Arabidopsis thaliana 
2019-01-10 | E-MTAB-6711 | biostudies-arrayexpress
TranscriptomicsRNA-seq, G pallida population D383 batch 1-2A cyst and hatched J2 samples, exposed for 8h, 24h, 48h to 2nM Solanoeclepin A (dissolved in 1% EtOH), potato root diffusate from wild accession PNT 777-2 (diluted to 0,1x with tap water) or tap water with 1% EtOH (spontaneous hatching control)
In this experiment we evaluate the transcriptional responses of G pallida D383 1-2A to diverse hatching stimulations by pure Solanoeclepin A or by potato root exudate. We used cysts hydrated for 7 days in tap water for the experiment. Water for hydration was changed every day. After hydration approx...
ORGANISM(S): Globodera pallida 
2023-04-01 | E-MTAB-11228 | biostudies-arrayexpress
Transcriptomicssmall RNAseq - Plant parasitic cyst nematodes respond to viral infection through siRNA activation
In this project we sequenced smallRNAs to see how both BCN (H.schachtii) and PCN (G. rostochiensis line 19 and 22) react to different viruses. After adapter removal, small RNA analysis was performed on sequences from 18 to 28 nt in length. Also the smallRNAs are mapped to the reference genomes of th...
ORGANISM(S): Heterodera schachtii 
2023-12-25 | E-MTAB-13351 | biostudies-arrayexpress
GenomicsDNA sequencing of Heterodera schachtii IRS (Woensdrecht) population
In order to polish a long-read genome assembly, short-read illumina data was obtained from Heterodera schachtii cysts (Woensdrecht population from IRS, the Netherlands). Cysts where obtained from infected plant material. Nematodes were cleaned using a sucrose gradient centrifugation step. Thereafter...
ORGANISM(S): Heterodera schachtii 
2023-11-03 | E-MTAB-13472 | biostudies-arrayexpress
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