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TranscriptomicsMATT mapping of Transposon insertions sites of strain G27 GPS-cat library
Genomic DNA from pools of H. pylori strain G27 Clones as indicated (pools of 300 (300p) or insertions in specific mapped genes) were amplifed using the MATT method to label DNA adjacent to the site of transposon insertion with the primer pairs indicated. The left side of the transposon was labeled i...
ORGANISM(S): Helicobacter pylori 
2005-08-26 | E-GEOD-3197 | biostudies-arrayexpress
UnknownCovalent organic frameworks-supported copper bismuth oxide nanoparticles as an efficient and green photocatalyst for benzyl alcohol oxidation.
Not available
S-EPMC12638315 | biostudies-literature
TranscriptomicsZebrafish transcriptomics in 24 and 36 hpf embryos after knockdown of glucocorticoid receptor translation
To further characterize the roles of cortisol signaling via the glucocorticoid receptor (GR) in developing zebrafish, we have used morpholino oligonucleotides to knockdown GR protein translation and measured gene expression in RNA extracted from 24 and 36 hours post fertilization (hpf) embryos. The...
ORGANISM(S): Danio rerio 
2013-08-28 | E-GEOD-50376 | biostudies-arrayexpress
TranscriptomicsIntegrative Molecular Profiling in Leiomyosarcoma
Leiomyosarcoma (LMS) is a soft tissue tumor with a significant degree of morphologic and molecular heterogeneity. We employed integrative molecular profiling to discover and characterize molecular subtypes of LMS. Gene expression profiling was performed on 51 LMS samples. Unsupervised clustering dem...
ORGANISM(S): Homo sapiens 
2009-11-11 | E-GEOD-17555 | biostudies-arrayexpress
TranscriptomicsTranscript profiling reveals expression differences in wild-type and glabrous soybean lines
Two high throughput transcript sequencing methods, Digital Gene Expression (DGE) Tag Profiling and RNA-Seq, were used to compare the transcriptional profiles in wild-type (cv. Clark standard, CS) and a mutant (cv. Clark glabrous, i.e., trichomeless or hairless, CG) soybean isoline that carries the d...
ORGANISM(S): Glycine max 
2011-10-25 | E-GEOD-33155 | biostudies-arrayexpress
TranscriptomicsDermatofibrosarcoma protuberans
Dermatofibrosarcoma protuberans (DFSP) is an aggressive spindle cell neoplasm. It is associated with the chromosomal translocation, t(17:22), which fuses the COL1A1 and PDGFbeta genes. We determined the characteristic gene expression profile of DFSP and characterized DNA copy number changes in DFSP ...
ORGANISM(S): Homo sapiens 
2005-12-29 | E-GEOD-3930 | biostudies-arrayexpress
TranscriptomicsTenosynovial giant-cell tumor and pigmented villonodular synovitis
Tenosynovial giant-cell tumor (TGCT) and pigmented villonodular synovitis (PVNS) are related conditions with features of both reactive inflammatory disorders and clonal neoplastic proliferations. Chromosomal translocations involving chromosome 1p13 have been reported in both TGCT and PVNS. We confir...
ORGANISM(S): Homo sapiens 
2006-02-24 | E-GEOD-4166 | biostudies-arrayexpress
TranscriptomicsGene expression profile of extraskeletal myxoid chondrosarcoma.
Abstract: Extraskeletal myxoid chondrosarcoma (EMC) is a soft tissue tumour that occurs primarily in the extremities and is characterized by a balanced translocation most commonly involving t(9;22) (q22;q12). The morphological spectrum of EMC is broad and thus a diagnosis based on histology alone ca...
ORGANISM(S): Homo sapiens 
2006-03-14 | E-GEOD-4303 | biostudies-arrayexpress
UnknownThirdhand smoke associations with the gut microbiomes of infants admitted to a neonatal intensive care unit: An observational study.
Not available
S-EPMC8187318 | biostudies-literature
GenomicsChIP-Seq with anti-FLAG antibodies to determine binding of LexA-3xFLAG to DNA in Streptomyces venezuelae treated with Mitomycin C (MMC) overnight
LexA is a transcriptional repressor for genes requiring expression primarily during SOS response in response to stress such as that caused by DNA alkylating agent Mitomycin C (MMC). LexA undergoes self-cleavage under stress conditions thereby lifting the repression on genes whose expression is requi...
ORGANISM(S): Streptomyces venezuelae 
2022-07-06 | E-MTAB-11603 | biostudies-arrayexpress
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