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ProteomicsIron-starvation induces photosystem I antenna remodeling in green algae
Dunaliella salina and Dunaliella tertiolecta are extremophile, marine algae that can survive in very low Fe conditions. In this study, we used TMT-proteomics to compare the Fe starvation responses to the Fe replete responses. Samples were digested with trypsin, labeled with TMT 10-Plex, then analyze...
ORGANISM(S): Dunaliella Tertiolecta (ncbitaxon:3047) Dunaliella Cf. Bardawil Chpd1 (ncbitaxon:1227098) 
2024-11-20 | MSV000096479 | MassIVE
ProteomicsChlamydomonas reinhardtii responses to Fe-excess, Fe-deficiency, and Fe-limitation in either photoautotrophic or mixotrophic growth
A systems level analysis of Chlamydomonas reinhardtii grown photoautotrophically or mixotrophically with a reduced carbon source, acetate, under four different defined Fe stages of Fe-replete, Fe-deficient, Fe-limited, or Fe-excess. Samples were digested with trypsin, labeled with TMT 10-Plex, then ...
ORGANISM(S): Chlamydomonas Reinhardtii (ncbitaxon:3055) 
2024-11-20 | MSV000096475 | MassIVE
ProteomicsSystems analysis of Chromochloris zofingiensis during copper, iron, and zinc deficiencies
A systems level analysis of Chromochloris zofingiensis during copper, iron, and zinc deficiencies when grown photoautotrophically and mixotrophically in a revised TP medium with special K mineral nutrients.
ORGANISM(S): Chromochloris Zofingiensis (ncbitaxon:31302) 
2024-11-08 | MSV000096362 | MassIVE
ProteomicsUnderstanding with environmental proteomics the underlying processes triggered by ornamental lighting on phototrophic biofilms growing on stone-built heritage.
Recent and ongoing studies evidence that certain LED lights, suitable for illuminating the urban fabric, avoiding primary colours such as blue, green, and red, may halt the biological colonization on stone monuments, mainly caused by algae and cyanobacteria forming subaerial biofilms (SABs). However...
ORGANISM(S): Cyanobacteria Bacteria 
2025-05-13 | PXD050424 | Pride
Environmental proteomics  lighting treatment  monumental illumination  scenedesmus Tetradesmus and chlorella  stone heritage  subaerial biofilm (sab). 
TranscriptomicsGenome-wide DNA methylation study of hip and knee osteoarthritic and healthy cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis
Cartilage samples were collected from hip or knee joint replacement patients either due to primary OA or hip fractures as controls. DNA was extracted from the collected cartilage and assayed by Illumina Infinium HumanMethylation450 ‎BeadChip array, which allows for the analysis of >480,000 CpG sit...
ORGANISM(S): Homo sapiens 
2016-07-01 | E-GEOD-73626 | biostudies-arrayexpress
TranscriptomicsTranscript and metabolite analysis of Vitis vinifera cv. Trincadeira berries infected with Botrytis cinerea reveals an activation of a non-sustained plant defense response
Vitis vinifera berries are sensitive towards infection by the necrothopic pathogen Botrytis cinerea leading to important economic losses worldwide. The combined analysis of the transcriptome and metabolome associated with the infection has not been previously performed in grapes or in another fleshy...
ORGANISM(S): Vitis vinifera 
2014-03-31 | E-GEOD-52586 | biostudies-arrayexpress
UnknownSubsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine.
Not available
S-EPMC4865362 | biostudies-literature
TranscriptomicsGenome-Wide Expression Profiling Deciphers Host Responses Altered during Dengue Shock Syndrome and Reveals the Role of Innate Immunity in Severe Dengue
Background Deciphering host responses contributing to dengue shock syndrome (DSS), the life-threatening form of acute viral dengue infections, is required to improve both the differential prognosis and the treatments provided to DSS patients, a challenge for clinicians. Methodology/Principal Findin...
ORGANISM(S): Homo sapiens 
2010-07-21 | E-GEOD-17924 | biostudies-arrayexpress
Transcriptomicsrat small intestine samples
Experiment description 1. Experimental design 1) Authors, laboratory, and contact: Xue-Lin Cui1, Patricia Soteropoulos2, Peter Tolias2, Ronaldo P. Ferraris1: 1Dept. of Pharmacology and Physiology, UMDNJ-New Jersey Medical School, Newark, NJ 07103-2714, 2Center for Applied Genomics, PHRI, 225 Warre...
ORGANISM(S): Rattus norvegicus 
2010-06-09 | E-GEOD-996 | biostudies-arrayexpress
TranscriptomicsExpression profiles of embryo-defective Arabidopsis thaliana mutants increased size exclusion limit1 (ise1) and ise2
We use Arabidopsis thaliana embryogenesis as a model system for studying intercellular transport via plasmodesmata (PD). A forward genetic screen for altered PD transport identified ise1 and ise2 mutants with increased intercellular transport of fluorescent 10-kDa tracers. Both ise1 and ise2 exhibit...
ORGANISM(S): Arabidopsis thaliana 
2011-11-09 | E-GEOD-33558 | biostudies-arrayexpress
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