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MetabolomicsGrowth Substrate and Prophage Induction Collectively Influence Metabolite and Lipid Profiles in a Marine Bacterium

Bacterial growth substrates influence a variety of biological functions, including the biosynthesis and regulation of lipid intermediates. The extent of this rewiring is not well understood nor has it been considered in the context of virally-infected cells. Here, we use a one-host-two-temperate ...

2022-08-04 | MTBLS5345 | MetaboLights
MetabolomicsDynamic utilization of low-molecular-weight organic substrates across a microbial growth rate gradient

AIM: Low-molecular-weight organic substances (LMWOSs) are at the nexus between micro-organisms, plant roots, detritus and the soil mineral matrix. The nominal oxidation state of carbon (NOSC) has been suggested as a potential parameter for modelling microbial uptake rates of LMWO...

2023-08-14 | MTBLS3558 | MetaboLights
GenomicsMycoplasma Pneumoniae transcriptome along Growth Curve
Mycoplasma Pneumoniae transcriptome along Growth Curve
PRJEB9843 | ENA
TranscriptomicsTranscription profiling of Bordetella pertussis from mid-log phase cultures diluted to two concentrations and sampled at multiple points along the growth curve to determine growth phase-associated patterns of transcript abundance
B. pertussis mid-log phase cultures were diluted in modified Stainer-Scholte medium to a starting optical density at 600 nm of 0.03 to 0.05, then grown at 37 C with shaking until stationary phase. Samples were taken at multiple points along the growth curve.
ORGANISM(S): Bordetella pertussis 
2006-12-31 | E-TABM-101 | biostudies-arrayexpress
TranscriptomicsSulfolobus solfataricus P2 growth curve, tiling arrays
Experimentally mapped transcriptome structure of Sulfolobus solfataricus P2 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 25 nt). Sulfolobus solfataricus P2 growth curve experiments were conducted in batch culture. Refer...
ORGANISM(S): Sulfolobus solfataricus P2 
2011-06-27 | E-GEOD-26779 | biostudies-arrayexpress
ProteomicsRuegeria pomeroyi growth curve
The ubiquitous heterotrophic marine bacterium, Rugeria pomeroyi, was experimentally cultured under both environmentally realistic carbon conditions and with a tracer-level addition of 13C-labeled leucine. Bacterial protein biosynthesis was tracked through exponential and stationary growth phases. Th...
ORGANISM(S): Ruegeria pomeroyi 
2019-07-31 | PXD008661 | Pride
Ruegeria pomeroyi Growth curve Bacteria 13c leucine 
TranscriptomicsMethanococcus maripaludis S2 growth curve, tiling arrays
Experimentally mapped transcriptome structure of Methanococcus maripaludis S2 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 14 nt). Methanococcus maripaludis MM901, a wild type Methanococcus maripaludis S2 with an in fra...
ORGANISM(S): Methanococcus maripaludis S2 
2011-06-27 | E-GEOD-26777 | biostudies-arrayexpress
TranscriptomicsPyrococcus furiosus DSM 3638 growth curve, tiling arrays
Experimentally mapped transcriptome structure of Pyrococcus furiosus DSM 3638 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 16 nt). Pyrococcus furiosus DSM 3638 growth curve experiments were conducted in batch culture. R...
ORGANISM(S): Pyrococcus furiosus DSM 3638 
2011-06-27 | E-GEOD-26778 | biostudies-arrayexpress
TranscriptomicsHalobacterium NRC-1 Growth curve and GTF perturbation
Total RNA was collected at 6 or 8 points throughout the growth curve of Halobacterium NRC1 for wild-type, non-native expression of general transcription factors and knock-out strains of general transcription factors. This RNA was hybridized against our standard reference RNA (wild-type OD600 0.5-0.6...
ORGANISM(S): Halobacterium salinarum NRC-1 
2007-02-23 | GSE6776 | GEO
GenomicsSaccharolobus solfataricus P2
Sulfolobus solfataricus P2 growth curve, tiling arrays
PRJNA142121 | ENA
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