Hackett James J

Show results for

Unknown (53)
Transcriptomics (4)
Genomics (2)
Metabolomics (1)

Organisms

Mus musculus (4)
Homo sapiens (2)

Repository

biostudies-arrayexpress (6)
MetaboLights (1)

Technology Type

Mass spectrometry (1)

Instrument Platform

NextSeq 500 (2)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)

Publication Date

2023 (4)
2013 (2)
2012 (1)

CHEBI ID

CHEBI:10072 (1)
CHEBI:1148 (1)
CHEBI:11814 (1)
CHEBI:12936 (1)
CHEBI:12962 (1)
CHEBI:133083 (1)
CHEBI:1387 (1)
CHEBI:14314 (1)
CHEBI:144330 (1)
CHEBI:15318 (1)
CHEBI:15344 (1)
CHEBI:15346 (1)
CHEBI:15351 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15380 (1)
CHEBI:15414 (1)
CHEBI:15422 (1)
CHEBI:15468 (1)
CHEBI:1547 (1)
CHEBI:15473 (1)
CHEBI:15487 (1)
CHEBI:15517 (1)
CHEBI:15531 (1)
CHEBI:15533 (1)
CHEBI:15539 (1)
CHEBI:15551 (1)
CHEBI:15552 (1)
CHEBI:15555 (1)
CHEBI:15584 (1)

Metabolite Name

(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
1,3-Diaminopropane (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)
2,5-Dihydroxybenzaldehyde (1)
2,5-Dihydroxybenzoic acid (1)
2-(Hydroxymethyl)butanoic acid (1)
2-Amino-3-methoxybenzoic acid (1)
2-Aminoadipic acid (1)
2-Deoxy-5-cytidylic acid (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-D-ribose (1)
2-Deoxyadenosine (1)
2-Deoxyadenosine 5-triphosphate (1)
2-Deoxycytidine (1)
2-Deoxycytidine 5-diphosphate (1)
2-Deoxyguanosine (1)
2-Deoxyguanosine 5-diphosphate (1)
2-Deoxyguanosine 5-triphosphate (1)
2-Deoxyinosine (1)
2-Deoxyribose-5-phosphate (1)
2-Deoxyuridine (1)
2-Deoxyuridine 5-monophosphate (1)

Study type

Bisulfite-seq (1)
DNA-seq (1)
Transcription profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2018 (10)
2023 (8)
2022 (7)
2020 (6)
2017 (5)
2013 (4)
2021 (4)
2019 (4)
2012 (2)
2025 (2)
2024 (1)
2016 (1)
2015 (1)
2014 (1)
2011 (1)
2010 (1)
2008 (1)

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Community-based prehabilitation before elective major surgery: the PREP-WELL quality improvement project.

Not available

S-EPMC7206908 | biostudies-literature

Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening.

Not available

S-EPMC6094467 | biostudies-literature

Quantitative trait loci mapping of polyphenol metabolites from a 'Latham' x 'Glen Moy' red raspberry (Rubus idaeus L) cross.

Not available

S-EPMC10409862 | biostudies-literature

Transcriptome profiles of paternal testis and their offspring in response to gut microbiota dysbiosis using RNA sequencing analysis

Tissue samples harvested from conventionally-raised sire and their offspring or dysbiotic sire and their offspring were profiled for transcriptome changes using total RNA sequencing. Total RNA was extracted from four different tissue types: sire testis, F1 placenta (at E13.5 & E18.5), and F1 brain a...

ORGANISM(S): Mus musculus

2023-11-13 | E-MTAB-10034 | biostudies-arrayexpress

DNA methylation profiles of mouse sperm in response to antibiotic-induced gut microbiota dysbiosis using whole-genome bisulfite sequencing

DNA methylation profile of mouse sperm from conventionally-raised mice and gut dysbiosis experienced mice were characterized using whole-genome bisulfite sequencing. Genome-wide DNA methylation changes between control and dysbiotic male�s sperm were highly comparable, with no change in DNAme globall...

ORGANISM(S): Mus musculus

2023-11-13 | E-MTAB-10033 | biostudies-arrayexpress

Genomic profiling of offspring liver tissue in response to paternal gut microbiota dysbiosis using whole genome sequencing

Liver tissue samples were harvested from offspring sired by conventionally-raised male mice or dysbiotic sire, and profiled for genome changes using whole genome sequencing. F1 offspring samples were collected from six independent mating, and gDNA was extracted from offspring liver at postnatal day ...

ORGANISM(S): Mus musculus

2023-11-13 | E-MTAB-10273 | biostudies-arrayexpress

The impact of a digital joint school educational programme on post-operative outcomes following lower limb arthroplasty: a retrospective comparative cohort study.

Not available

S-EPMC9053557 | biostudies-literature

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley.

Not available

S-EPMC3922333 | biostudies-literature

Quantitative trait loci associated with different polar metabolites in perennial ryegrass - providing scope for breeding towards increasing certain polar metabolites.

Not available

S-EPMC5634963 | biostudies-literature

Dual organism transcriptomics of airway epithelial cells interacting with conidia of Aspergillus fumigatus.