Hagen S S - OmicsDI

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Transcriptomics (38)
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Genomics (4)
Metabolomics (1)

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Homo sapiens (20)
Mus musculus (17)
Arabidopsis thaliana (8)
Bos taurus (3)
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Drosophila melanogaster (2)
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Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 (1)
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Bacteroides fragilis NCTC 9343 (1)
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Thermochaetoides thermophila (1)
bovine gut metagenome (1)

Organisms

Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (40)
pride (34)
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Disease

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Congenital disorder of glycosylation (1)
Hyperphosphatemic familial tumoral calcinosis (1)
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Mixed disorder as reaction to stress (1)
Multiple myeloma (1)
Urinary bladder cancer (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (21)
Bottom-up proteomics (8)
Data-dependent acquisition (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
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HDMSE (1)
Metaproteomics (1)

Instrument Platform

NextSeq 500 (3)
FACS (1)
X86_64-apple-darwin13.4.0 (64-bit) (1)
ScanArray 4000 [PerkinElmer] (1)
NA (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
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Q Exactive HF (1)
Liquid Chromatography MS - alternating - reverse phase (1)
ESI-ION-TRAP (1)

Publication Date

2015 (9)
2020 (7)
2012 (6)
2023 (6)
2025 (6)
2022 (5)
2026 (5)
2007 (4)
2024 (4)
2017 (3)
2016 (3)
2014 (3)
2011 (3)
2008 (3)
2021 (3)
2019 (3)
2010 (2)
2009 (2)
2018 (2)
2006 (1)

CHEBI ID

CHEBI:10017 (1)
CHEBI:10072 (1)
CHEBI:113 (1)
CHEBI:1148 (1)
CHEBI:115 (1)
CHEBI:116931 (1)
CHEBI:122 (1)
CHEBI:12532 (1)
CHEBI:125610 (1)
CHEBI:132810 (1)
CHEBI:132983 (1)
CHEBI:133057 (1)
CHEBI:133530 (1)
CHEBI:134458 (1)
CHEBI:135150 (1)
CHEBI:136292 (1)
CHEBI:136805 (1)
CHEBI:137245 (1)
CHEBI:138520 (1)
CHEBI:138529 (1)
CHEBI:1387 (1)
CHEBI:139388 (1)
CHEBI:140761 (1)
CHEBI:141565 (1)
CHEBI:142592 (1)
CHEBI:142593 (1)
CHEBI:1427 (1)
CHEBI:143045 (1)
CHEBI:143244 (1)
CHEBI:145961 (1)

Metabolite Name

(+)-dethiobiotin (1)
(+)-hydrobenzoin (1)
(+/-)-6-Hydroxy-3-oxo-alpha-ionol (1)
(+/-)-Eucalyptol (1)
(+/-)-Metanephrine (1)
(-)-Sativan (1)
(-)-Shikimic acid (1)
(-)-Usnicacid (1)
(2E)-2-[(Methylsulfanyl)methyl]-2-butenal (1)
(2S)-2-[(4-Aminobenzoyl)amino]pentanedioate (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(5E)-7-methylidene-10-oxo-4-(propan-2-yl)undec-5-enoic acid (1)
(E)-2-nonenal (1)
(E)-3,4,5-Trimethoxycinnamic acid (1)
(R)-2-Methylimino-1-phenylpropan-1-ol (1)
(R)-Norcoclaurine (1)
(R)-Salsolinol (1)
(S)-3'-Hydroxy-N-methylcoclaurine (1)
(S)-beta-Methylindolepyruvate (1)
-L-Fucopyranose (1)
1,3-dipyridin-3-ylpropane-1,3-dione (1)
1-(1,8-dihydroxy-3,6-dimethyl-2-naphthyl)ethan-1-one (1)
1-(2,4-dihydroxyphenyl)-2-(3,5-dimethoxyphenyl)propan-1-one (1)
1-(2-Carboxyethyl)-2,3,4,9-tetrahydro-1H-beta-carboline-3-carboxylic acid (1)
1-(3,4-dimethoxyphenyl)ethan-1-one oxime (1)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (1)
1-Hexanoic acid (1)
1-Methyl Adenosine (1)
1-Methyladenine (1)
1-Methylinosine (1)

First Public Date

2023 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (6)
Other (3)
Cell line - High-throughput sequencing (2)
Unknown experiment type (1)
Plant - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
ChIP-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2024 (106)
2025 (101)
2023 (101)
2021 (101)
2022 (98)
2020 (76)
2019 (65)
2017 (43)
2018 (38)
2015 (35)
2016 (31)
2014 (28)
2013 (23)
2010 (16)
2012 (15)
2009 (14)
2011 (12)
2026 (11)
2008 (8)
2006 (5)
2007 (4)
2003 (3)
2005 (2)
1999 (1)
1998 (1)

Lab affiliation

Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (2)
Norwegian University of Life Sciences (2)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (1)
Center of Excellence in Systems Biology, Research affairs, Faculty of Medicine, Chulalongkorn University (1)
Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, QLD, Australia (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Cancer Research and Molecular Medicine, NTNU, N-7489 Trondheim, Norway (1)
Department of Cancer Research and Molecular Medicine, NTNU, Norway (1)
European Molecular Biology Laboratory (EMBL), Structural and Computational Biology Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany (1)
European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany (1)
Faculty of Biotechnology, Chemistry and Food Science, NMBU - Norwegian University of Life Sciences, Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway (1)
General Manager of PROMEC Department of Clinical and Molecular Medicine Phone: +4773598508 +4772573342 Address: Laboratoriesenteret, 231.04.008, Øya, Erling Skjalgssons gate 1, Trondheim, Norway (1)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Leader of the Protein Engineering and Proteomics group (PEP) at Norwegian University of Life Sciences (1)
NIDCR, NIH (1)
NIH/NIDCR (1)
NMBU, Norway (1)
Oklahoma State University Department of Animal and Food Sciences Stillwater, OK, USA (1)
Poochon Scientific LLC (1)
Poochon Scientific, LLC (1)
Professor i molekylærbiologi og faglig leder av PROMEC Institutt for klinisk og molekylær medisin Erling Skjalgssons g 1, aboratoriesenteret * * Laboratoriesenter Norwegian University of Science and Technology Trondheim 7030 Norway ( lab head ) (1)
Professor in molecular biology and scientific leader of PROMEC Department of Clinical and Molecular Medicine Faculty of Medicine and Health Sciences +4773598608 +4791825455 +4772573076 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 Trondheim 7030, Norway (1)
Professor, Centre for Microbiome Research, Queensland University of Technology | Translational Research Institute (1)
Proteomics (1)
Section eScience (S.3), Federal Institute for Materials Research and Testing, Berlin, Germany Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)
Systems Inflammation group, Centre of Molecular Inflammation Research (CEMIR), and Department of Clinical and Molecular Medicine (IKOM), Norwegian University of Science and Technology, Norway (1)
University of California, Davis, CA, USA (1)

Tags

xref:PubMed:38847336 (1)

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RNA-seq of Drosophila simulans and Drosophila mauritiana developing male genitalia

We generated RNA-seq data of Drosophila simulans and Drosophila mauritiana developing male genitalia in order to identify expression level differences between these species. These species are closely related, yet have dramatic differences in their male genital morphologies. Three independent RNA...

ORGANISM(S): Drosophila simulans

2020-08-29 | E-MTAB-9465 | biostudies-arrayexpress

Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii

Two S. rolfsii transcriptomes obtained from scleroglucan-producing and scleroglucan-nonproducing conditions were pooled and sequenced using the 454 pyrosequencing technique yielding ~350,000 reads. These could be assembled into 21,937 contigs and 171,833 singletons, for which 6,951 had significant m...

ORGANISM(S): Athelia rolfsii

2010-05-15 | E-GEOD-21040 | biostudies-arrayexpress

Two Prevalent ∼100-kb GYPB Deletions Causative of the GPB-Deficient Blood Group MNS Phenotype S-s-U- in Black Africans.

Not available

S-EPMC7443675 | biostudies-literature

Psychopathic personality traits are associated with experimentally induced approach and appraisal of fear-evoking stimuli indicating fear enjoyment.

Not available

S-EPMC11906771 | biostudies-literature

Antimicrobial activities of fungus comb extracts isolated from Indomalayan termite (Macrotermes gilvus Hagen) mound.

Not available

S-EPMC8831673 | biostudies-literature

Detection, characterization, and in vitro and in vivo expression of genes encoding S-proteins in Lactobacillus gallinarum strains isolated from chicken crops.

Not available

S-EPMC1287629 | biostudies-literature

A biosynthetic pathway for ornithine lipid formation dependent on a GH3 (Gretchen Hagen 3)-like enzyme in planctomycetes.

Not available

S-EPMC12493201 | biostudies-literature

Sequential high-dose cytarabine and mitoxantrone (S-HAM) versus standard double induction in acute myeloid leukemia-a phase 3 study.

Not available

S-EPMC6286323 | biostudies-literature

Microbial alginate foraging is conserved in geographically and taxonomically distinct ruminant microbiomes

Saccharina latissima is a brown alga commonly found in the North Atlantic, Arctic and Pacific oceans. Alginate constitutes a substantial portion of the cell wall of S. latissima, and its digestion requires a specific set of enzymes, alginate lyases. We investigated if and how S. latissima is metabol...

ORGANISM(S): organismal metagenomes

2026-04-16 | PXD059090 | Pride

Nodule-Enriched GRETCHEN HAGEN 3 Enzymes Have Distinct Substrate Specificities and Are Important for Proper Soybean Nodule Development.

Not available

S-EPMC5751150 | biostudies-literature

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979 Results

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