Haloarchaea - OmicsDI

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Unknown (248)
Genomics (75)
Proteomics (20)
Transcriptomics (16)
Other (2)
Methylation profiling (1)
Metabolomics (1)

Organisms

Haloferax volcanii (7)
Haloferax volcanii DS2 (6)
Haloarcula hispanica (3)
Haloferax mediterranei (3)
Haloferax mediterranei ATCC 33500 (2)
Halobacterium salinarum (1)
Ruminococcus sp. HUN007 (1)
Peptostreptococcaceae bacterium VA2 (1)
Selenomonas sp. AB3002 (1)
Selenomonas ruminantium AC2024 (1)
Lachnospiraceae bacterium AC2031 (1)
Ruminococcaceae bacterium AE2021 (1)
Eubacterium sp. AB3007 (1)
Bryobacter aggregatus MPL3 (1)
Kallotenue papyrolyticum (1)
Methylobacterium sp. EUR3 AL-11 (1)
Desulfotignum balticum DSM 7044 (1)
Solidesulfovibrio cf. magneticus IFRC170 (1)
Oxalobacteraceae bacterium AB_14 (1)
Thiomonas sp. FB-6 (1)
Thioalkalivibrio sp. ARh3 (1)
Methylophilaceae bacterium 11 (1)
Sphingomonas melonis C3 (1)
Hippea sp. KM1 (1)
Hippea alviniae EP5-r (1)
Sinorhizobium medicae WSM1115 (1)
Niabella soli DSM 19437 (1)
Sporocytophaga myxococcoides DSM 11118 (1)
Orenia marismortui DSM 5156 (1)
Echinicola vietnamensis DSM 17526 (1)

Organisms

Haloferax volcanii (9)
Halanaeroarchaeum sulfurireducens (2)
Halodesulfurarchaeum formicicum (2)
Halobacterium salinarum NRC-1 (2)
Haloferax mediterranei (2)
Haloferax volcanii DS2 (2)
Halorussus sp. JP-T4 (1)
Halostella sp. JP-L12 (1)
Haloarculaceae archaeon (1)
Haloarcula sp. JP-L23 (1)
Haloarcula sp. JP-Z28 (1)
Halovenus rubra (1)
Halorubrum sp. (1)
halophilic archaeon DL31 (1)
Haladaptatus sp. W1 (1)
Natrinema thermotolerans A29 (1)
Halosegnis rubeus (1)
Halobacterium (1)
Candidatus Methanohalarchaeum thermophilum (1)
Methanonatronarchaeum thermophilum (1)
Halorubrum sp. RHBC (1)
Halorubrum sp. B53 (1)
Halorubrum sp. B52 (1)
soda lake metagenome (1)
Halomonas aestuarii (1)
Haloferax gibbonsii (1)
Halorubrum sp. AJ67 (1)
Haloarcula mannanilytica (1)
Halobacteria (1)

Repository

ENA (71)
pride (15)
geo (13)
biostudies-arrayexpress (9)
PAXDB (4)
GNPS (1)
jPOST (1)
MassIVE (1)

Tissue

Cell culture (4)
Prokaryotic cell (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (7)
Bottom-up proteomics (3)
Data-dependent acquisition (3)
Top-down proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)

Instrument Platform

Q Exactive (2)

Publication Date

2018 (6)
2016 (5)
2024 (5)
2013 (4)
2025 (4)
2022 (4)
2020 (3)
2017 (3)
2012 (2)
2010 (2)
2014 (1)
2026 (1)
2023 (1)
2021 (1)
2019 (1)
2015 (1)

UNIPROT ID/AC

547559.Nmag_1187 (2)
6PGD_HALVD (2)
AGL10_HALVD (2)
AGL11_HALVD (2)
AGL12_HALVD (2)
AGL14_HALVD (2)
AGL5_HALVD (2)
AGL7_HALVD (2)
AGLB_HALVD (2)
AGLF_HALVD (2)
AGLM_HALVD (2)
AGLP_HALVD (2)
ALF_HALVD (2)
ANTRB_HALVD (2)
ARCS_HALVD (2)
ATGT_HALVD (2)
C5MK48_NATMM (2)
CAS3_HALVD (2)
CAS5_HALVD (2)
CAS6_HALVD (2)
CAS7_HALVD (2)
CAS8B_HALVD (2)
CETZ1_HALVD (2)
CETZ2_HALVD (2)
CETZ5_HALVD (2)
CETZ6_HALVD (2)
CISY_HALVD (2)
CSG_HALVD (2)
D3SQJ3_NATMM (2)
D3SQJ4_NATMM (2)

First Public Date

2024 (15)
2020 (9)
2022 (7)
2019 (6)
2017 (6)
2021 (5)
2016 (5)
2026 (3)
2025 (3)
2018 (3)
2015 (3)
2014 (3)
2013 (2)
2023 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (6)
Transcription profiling by tiling array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2021 (29)
2023 (25)
2024 (24)
2016 (18)
2018 (17)
2015 (17)
2014 (15)
2020 (15)
2019 (15)
2025 (12)
2022 (12)
2012 (11)
2013 (9)
2017 (8)
2007 (7)
2008 (6)
2010 (5)
2011 (4)
2026 (3)
2006 (2)
2009 (1)
2005 (1)
2004 (1)

Lab affiliation

School of Biotechnology and Biomolecular Sciences The University of NSW Sydney NSW 2052 Australia (2)
Agrochemistry and Biochemistry Department. University of Alicante (1)
Australian Institute for Microbiology and Infection, University of Technology Sydney, Australia (1)
Department of Biology, Johns Hopkins University, USA (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Dr. Uwe Linne Philipps-Universität Marburg Fachbereich Chemie und Synmikro Gerätezentrum Massenspektrometrie und Elementanalaytik Hans-Meerwein-Str. 4 35032 Marburg, GERMANY (1)
Institute for Biological Resources and Marine Biotechnologies (CNR), Italian National Research Council, Messina, Italy (1)
Institute of Human Nutrition and Food Science, Department of Metabolomics, University of Kiel, Germany; Max Planck Institute for Marine Microbiology, Bremen, Germany (1)
Institute of Polar Research, ISP-CNR, Messina, Italy (1)
Max Planck Institute for Marine Microbiology Archaeal Virology Celsiusstrasse 1 28359 Bremen, Germany (1)
School of Biotechnology and Biomolecular Sciences University of NSW (1)
School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, New South Wales, Australia. (1)
School of Biotechnology and Biomolecular Sciences, The University of NSW, Sydney NSW 2052 Australia (1)
University of NSW, BABS (1)

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Proteomic analysis of sulfur-respiring haloarchaea from hypersaline lakes

Dimitry Y. Sorokin et al., (2021, Russian Academy of Sciences, Russia and Delft University of Technology, The Netherlands) describe the isolation and physiological and genomic properties of a fifth functional group of sulfur-respiring haloarchaea enriched from hypersaline lake sediments with CO as t...

ORGANISM(S): Archaea

2022-12-25 | PXD028241 | Pride

Community of haloarchaea, enriched at low temperature

PRJEB15147 | ENA

Xylan utilization by haloarchaea-nanohaloarchaea associations

In hypersaline brines, biodegradation of recalcitrant plant polymers can be inhibited by salt-induced microbial stress and/or caused by inadequate metabolic capabilities of extremely halophilic microbes. Therefore, woody materials can be well-preserved even in NaCl brines that are less biologically ...

ORGANISM(S): Haloferax lucentense Nanohaloarchaea archaeon

2023-10-24 | PXD036877 | Pride

Haloarchaea Nanohaloarchaea Hypersaline habitats Symbiosis Xylan degradation

Molecular study on Haloarchaea metagenomic assembly

EMG produced TPA metagenomics assembly of the Molecular study on haloarchaea producing industerially important enzymes (Molecular study on Haloarchaea) data set

PRJEB22526 | ENA

Sucrose metabolism in haloarchaea: reassessment using genomics, proteomics and metagenomics

We used quantitative proteomics (8-plex iTRAQ labeling) to investigate pathways and enzymes potentially important for sucrose metabolism in the halophilic archaeon Halohasta litchfieldiae. The data provided insights into the dynamics of the Hht. litchfieldiae proteome in response to sucrose, advanci...

ORGANISM(S): Halohasta litchfieldiae

2019-01-31 | PXD010137 | Pride

Fructose metabolism archaea sugar catabolism microbial physiology metabolic pathway pathway reconstruction

Deciphering Pathways for Carotenogenesis in Haloarchaea.

Not available

S-EPMC7179442 | biostudies-literature

Haloarchaea low salinity

PRJNA932992 | ENA

Haloarchaea low salinity

PRJNA933382 | ENA

Haloarchaea low salinity

PRJNA932998 | ENA

Haloarchaea low salinity

PRJNA933371 | ENA

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363 Results

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