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TranscriptomicsMeasurement of mRNA decay in exponentially growing cultures of the extremely halophilic euryarchaeon Halobacterium salinarum NRC-1 after blocking transcription with actinomycin D
mRNA half-lives in exponentially growing cultures of the extremely halophilic euryarchaeon Halobacterium salinarum NRC-1
ORGANISM(S): Halobacterium salinarum 
2007-07-31 | E-MEXP-1088 | biostudies-arrayexpress
TranscriptomicsHalobacterium salinarum NRC-1 growth curve
Halobacterium salinarum NRC-1 was grown in CM media, at 37oC in a waterbath with agitation of 125 rpm under constant light. Analysis of transcriptional changes during growth, in addition to mapping of transcriptome structure under the same conditions, provided interesting insights about regulatory l...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-17 | E-GEOD-12977 | biostudies-arrayexpress
TranscriptomicsHalobacterium salinarum NRC-1 VNG1451C transcription factor ChIP-chip with and without carbon sources
Gene regulatory networks play an important role in coordinating biochemical fluxes through diverse metabolic pathways. The modulation of enzyme levels enables efficient utilization of limited resources as organisms dynamically acclimate to nutritional fluctuations in their environment. Here we hav...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-06 | E-GEOD-13498 | biostudies-arrayexpress
TranscriptomicsHalobacterium salinarum NRC-1 total RNA hybridization of TFBd overexpression versus Reference sample
Total RNA hybridizations of Halobacterium salinarum NRC-1 total RNA versus a strain overexpressing TFBd were compared to verify the transcriptome landscape changes. Comparison with TFBd binding sites localized using ChIP-chip data and MeDiChI algorithm (Reiss et al, 2008) allowed observation that TF...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-17 | E-GEOD-15788 | biostudies-arrayexpress
GenomicsHalobacterium salinarum NRC-1
Halobacterium salinarum NRC-1
PRJNA986501 | ENA
TranscriptomicsHalobacterium NRC-1 ura3 parent strain and VNG1451C deletion mutant in response to growth in rich medium
Gene regulatory networks play an important role in coordinating biochemical fluxes through diverse metabolic pathways. The modulation of enzyme levels enables efficient utilization of limited resources as organisms dynamically acclimate to nutritional fluctuations in their environment. Here we hav...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-06 | E-GEOD-13531 | biostudies-arrayexpress
TranscriptomicsHalobacterium NRC-1 VNG1451C deletion mutant growth in defined medium with and without glucose
Gene regulatory networks play an important role in coordinating biochemical fluxes through diverse metabolic pathways. The modulation of enzyme levels enables efficient utilization of limited resources as organisms dynamically acclimate to nutritional fluctuations in their environment. Here we hav...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-06 | E-GEOD-13529 | biostudies-arrayexpress
ProteomicsA comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS
Data-Independent Acquisition (DIA) is a mass spectrometry-based method to reliably identify and reproducibly quantify large fractions of a target proteome. The peptide-centric data analysis strategy employed in DIA requires a priori generated spectral assay libraries. Such assay libraries allow to e...
ORGANISM(S): Halobacterium salinarum 
2023-09-21 | PXD042770 | Pride
Dia Data-independent acquisition Swath Halobacterium salinarum nrc-1 Spectral assay library Dda Data-dependent acquisition 
TranscriptomicsHalobacterium salinarum NRC-1 growth curve, tiling arrays
Experimentally mapped transcriptome structure of H. salinarum NRC-1 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes with 40 nt overlap between contiguous probes). H. salinarum NRC-1 presents a number of interesting switches in metabol...
ORGANISM(S): Halobacterium sp. NRC-1 
2010-05-17 | E-GEOD-12923 | biostudies-arrayexpress
TranscriptomicsHalobacterium NRC-1 oxygen, light and pertubations
This SuperSeries is composed of the following subset Series: GSE7714: Halobacterium NRC-1 oxygen, light and phr1 perturbation GSE7715: Halobacterium NRC-1 oxygen, light and ura3 perturbation GSE7716: Halobacterium NRC-1 oxygen, light and phr1/phr2 perturbation GSE7717: Halobacterium NRC-1 oxygen, li...
ORGANISM(S): Halobacterium sp. NRC-1 
2008-01-02 | E-GEOD-7740 | biostudies-arrayexpress
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