Hamilton J J - OmicsDI

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Unknown (9215)
Transcriptomics (177)
Proteomics (84)
Metabolomics (72)
Genomics (34)
Models (11)
Genomic (3)
Other (2)

Organisms

Danio rerio (101)
Homo sapiens (82)
Mus musculus (40)
Burkholderia cenocepacia K56-2Valvano (9)
Rattus norvegicus (3)
Gallus gallus (3)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
Acinetobacter baumannii (1)
Ovis aries (1)
Iridovirus (1)
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Salmonella enterica (1)
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496866 (1)
Acinetobacter baumannii ATCC 17978 (1)
Anopheles gambiae (1)
Anopheles stephensi (1)

Organisms

Mus musculus (4)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

biostudies-arrayexpress (186)
MetaboLights (72)
pride (63)
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PAXDB (18)
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dbGaP (3)
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geo (1)
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Tissue

Blood plasma (9)
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Heart (1)
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Medulloblastoma cell (1)
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Secretion (1)
Seedling (1)
Skeletal muscle (1)

Disease

Not Available (2)
Colon cancer (2)
Toxicity (1)
Fish tuberculosis (1)
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Normal (1)
Acute leukemia (1)
Alzheimer's disease (1)
Cervix carcinoma (1)
Chronic kidney disease (1)
Coronary artery disease (1)
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Inflammatory bowel disease 1 (1)
Malaria (1)
Malignant neoplasm of ovary (1)
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Neurodevelopmental delay (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (63)
Mass spectrometry (61)
Shotgun proteomics (26)
Bottom-up proteomics (23)
Data-dependent acquisition (8)
Data-independent acquisition (8)
NMR spectroscopy (7)
Mass spectrometry assay (5)
NMR spectroscopy assay (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Affinity proteomics (2)
All-ion fragmentation (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)
MSE (1)
Metaproteomics (1)

Instrument Platform

Q Exactive (37)
Illumina HiSeq 4000 (9)
Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - positive - hilic (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Nuclear Magnetic Resonance (NMR) - (4)
Illumina HiSeq 2500 (3)
Bruker (3)
Liquid Chromatography MS - negative - hilic (3)
NextSeq 500 (2)
Instrument (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - - - Q Exactive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Becton Dickinson INFLUX (1)
Genepix (1)
Affymetix Gene Titan (1)
Affymetrix Gene Titan (1)
Agilent 2100 Bioanalyser, RNA 6000 Nano Kit chips (Agilent Technologies). NanoDrop® ND-1000 (Saveen&Werner). (1)
NanoDrop® ND-1000 (Saveen&Werner). (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Elite (1)
TripleTOF 6600 (1)
Velos Plus (1)

Publication Date

2014 (42)
2015 (25)
2025 (24)
2024 (22)
2011 (21)
2022 (20)
2012 (20)
2010 (20)
2021 (19)
2013 (19)
2023 (18)
2018 (16)
2016 (13)
2026 (12)
2009 (11)
2019 (11)
2005 (9)
2017 (9)
2008 (7)
2020 (6)
2007 (6)
2006 (3)

UNIPROT ID/AC

143BA_DANRE (18)
143BB_DANRE (18)
A0A0R4IGN3_DANRE (18)
A0A0R4IHT0_DANRE (18)
A0A0R4IKF0_DANRE (18)
A0A0R4IPH2_DANRE (18)
A0A0R4IPV5_DANRE (18)
A0A1L1QZF2_DANRE (18)
A2BGR9_DANRE (18)
A2BHA3_DANRE (18)
A8E7G6_DANRE (18)
A8KC02_DANRE (18)
ALDCB_DANRE (18)
B0R197_DANRE (18)
B3DFP9_DANRE (18)
B5DDE8_DANRE (18)
B8JL43_DANRE (18)
B8JLJ3_DANRE (18)
BHMT1_DANRE (18)
CISY_DANRE (18)
COX2_DANRE (18)
E7F4R9_DANRE (18)
E7FC32_DANRE (18)
EF1G_DANRE (18)
F1Q8J4_DANRE (18)
F1QAJ7_DANRE (18)
F1QCD4_DANRE (18)
F1QCE3_DANRE (18)
F1QF00_DANRE (18)
F1QGK0_DANRE (18)

CHEBI ID

CHEBI:15428 (47)
CHEBI:15354 (46)
CHEBI:27897 (46)
CHEBI:16449 (45)
CHEBI:17126 (45)
CHEBI:28300 (45)
CHEBI:30769 (45)
CHEBI:28044 (44)
CHEBI:15891 (43)
CHEBI:16919 (42)
CHEBI:17234 (42)
CHEBI:18237 (42)
CHEBI:15361 (1)
CHEBI:15422 (1)
CHEBI:15846 (1)
CHEBI:16027 (1)
CHEBI:16526 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:17138 (1)
CHEBI:17287 (1)
CHEBI:18021 (1)
CHEBI:26689 (1)
CHEBI:28087 (1)
CHEBI:29101 (1)
CHEBI:33282 (1)
CHEBI:4170 (1)
CHEBI:422 (1)
CHEBI:44897 (1)
CHEBI:57579 (1)

Metabolite Name

Alanine (41)
Asparagine (41)
Phenylalanine (41)
Serine (41)
Tryptophan (41)
Carnitine (40)
Glutamine (40)
Glycine (40)
Lysine (40)
Threonine (40)
Valine (40)
Arginine (39)
Citrulline (39)
Fructose (39)
Glutamate (39)
Isoleucine (39)
Leucine (39)
Methionine (39)
Ornithine (39)
Proline (39)
Taurine (39)
Tyrosine (39)
Choline (38)
Histidine (38)
Spermidine (38)
5-oxoproline (37)
Cysteine (37)
Deoxycarnitine (37)
Glucose (37)
Myo-inositol (37)

First Public Date

2026 (1)
2025 (1)
2024 (1)
2021 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (10)
Computational model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Proteomics Team, Nestlé Institute of Health Sciences, Lausanne, Switzerland (3)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
BioArCh, Department of Archaeology, University of York (1)
BioBix, Lab for Bioinformatics and Computational Genomics, Ghent University, Belgium (1)
Calico Labs, United States (1)
Cardeza Center for Vascular Biology Sidney Kimmel Medical College Thomas Jefferson University (1)
Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania (1)
Chemical Sciences Division, Oak Ridge National Laboratory (1)
Dep. of Health Sciences and Technology, ETH Zurich Schorenstrasse 16, 8603 Schwerzenbach, Switzerland (1)
Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of British Columbia (1)
Department of Biological Sciences College of Arts and Sciences University of South Carolina (1)
Department of Biophysics, Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic (1)
Department of Dermatology, Medical University Vienna (1)
Department of Molecular Neurology, University Hospital Erlangen, Friedrich-Alexander-University Erlangen-Nürnberg,91054 Erlangen, Germany. (1)
Department of Radiation Oncology, UT Southwestern Medical Center, Dallas, TX 75390, USA (1)
FU Berlin Institut für biologie-mikrobiologie Germany (1)
Freie Universität Berlin Institut für Biologie-Mikrobiologie (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Infectious Diseases, Department of Internal Medicine, Yale School of Medicine, Yale University, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Chevy Chase, MD, 20815, USA (1)
Institute of Microbiology, The Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic, (1)
Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz (1)
Institute of Structural and Molecular Biology, University College London, London, United Kingdom (1)
LMU Munich, Department of Chemistry (1)
Lachlan J. Smith, Ph.D. Associate Professor Department of Orthopaedic Surgery Perelman School of Medicine University of Pennsylvania 371 Stemmler Hall, 3450 Hamilton Walk Philadelphia, PA, 19104 USA (1)
Maine Medical Center Research Institute (1)
Martin Luther University Halle-Wittenberg Institute of Molecular Medicine (IMM) Section for Molecular Cell Biology Charles Tanford Protein Centre Kurt-Mothes-Str. 3a 06120 Halle (Saale) Germany (1)
Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (1)

IsPrivate

False (11)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Immuno-oncology (1)
Machine Learning Model (1)

Classification

viruses (1)

Study type

Transcription profiling by array (102)
RNA-seq of coding RNA (32)
ChIP-seq (8)
Other (6)
RNA-seq of coding RNA from single cells (6)
Unknown experiment type (5)
Comparative genomic hybridization by array (4)
Animal - High-throughput sequencing (3)
ChIP-chip by array (3)
MicroRNA profiling by array (3)
RNA-seq of non coding RNA (3)
ChIP-chip by tiling array (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
MeDIP-seq (1)
Animal - Single-cell sequencing (1)
Cell line - High-throughput sequencing (1)
ATAC-seq (1)

Release Date

2022 (1174)
2025 (1016)
2023 (1009)
2021 (951)
2024 (886)
2020 (783)
2019 (604)
2018 (508)
2017 (431)
2016 (346)
2015 (342)
2014 (299)
2013 (179)
2026 (168)
2012 (163)
2011 (154)
2010 (125)
2009 (84)
2008 (61)
2007 (40)
2006 (26)
2005 (21)
2003 (10)
2004 (6)
2002 (3)
2001 (3)
2000 (3)
1999 (3)
1998 (3)

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Na+/H+ exchanger type 1 is a receptor for pathogenic subgroup J avian leukosis virus.

Not available

S-EPMC1459389 | biostudies-literature

Development, antibiotic production, and ribosome assembly in Streptomyces venezuelae are impacted by RNase J and RNase III deletion.

Not available

S-EPMC4248846 | biostudies-literature

Defining the networks that connect RNase III and RNase J-mediated regulation of primary and specialized metabolism in <i>Streptomyces venezuelae</i>.

Not available

S-EPMC12096830 | biostudies-literature

The Impact of Breast Reduction Practice Variation in Hamilton, Ontario: A Cost Analysis.

Not available

S-EPMC12540353 | biostudies-literature

Trastuzumab and Pertuzumab in Patients with Non-Breast/Gastroesophageal HER2-Amplified Tumors: Results from the NCI-MATCH ECOG-ACRIN Trial (EAY131) Subprotocol J.

Not available

S-EPMC10984755 | biostudies-literature

Characteristics of patients receiving long-term opioid therapy for chronic noncancer pain: a cross-sectional survey of patients attending the Pain Management Centre at Hamilton General Hospital, Hamilton, Ontario.

Not available

S-EPMC4593412 | biostudies-literature

Runx+ HSPC, kdrl+ endothelial, and negative cells sorted from DMSO- or Lycorine-treated 3 dpf zebrafish embryos

The zebrafish is a powerful model for the study of hematopoietic stem and progenitor cells (HSPC). We have developed a novel HSPC-specific transgenic line (Runx1+23:GFP). We have used this line in time-lapse live imaging studies to track the migration of HSPC during development. We have also perform...

ORGANISM(S): Danio rerio

2015-01-15 | E-GEOD-56015 | biostudies-arrayexpress

Exploring participant attrition in a longitudinal follow-up of older adults: the Global Longitudinal Study of Osteoporosis in Women (GLOW) Hamilton cohort.

Not available

S-EPMC10373724 | biostudies-literature

Oral nicotine pouches have arrived at U.S. college campuses.

Not available

S-EPMC12702489 | biostudies-literature

Frailty Change and Major Osteoporotic Fracture in the Elderly: Data from the Global Longitudinal Study of Osteoporosis in Women 3-Year Hamilton Cohort.

Not available

S-EPMC5104549 | biostudies-literature