Han Y Y - OmicsDI

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Unknown (32052)
Proteomics (562)
Transcriptomics (189)
Genomics (85)
Metabolomics (62)
Multiomics (4)
Other (3)
Models (2)

Organisms

Homo sapiens (194)
Mus musculus (99)
Caenorhabditis elegans (24)
Rattus norvegicus (14)
Gallus gallus (9)
Arabidopsis thaliana (8)
Zea mays (7)
Saccharomyces cerevisiae (5)
Marmota monax (4)
Haloarcula hispanica (3)
Oryza sativa (3)
Danio rerio (3)
Drosophila melanogaster (3)
Severe acute respiratory syndrome coronavirus 2 (2)
Dichelobacter nodosus (2)
Schizophyllum commune (2)
Streptococcus suis (2)
Spalax carmeli (1)
Coccinella septempunctata (1)
Nannospalax galili (1)
Metallosphaera sedula DSM 5348 (1)
Pseudopodoces humilis (1)
Nannochloropsis oceanica (1)
Haloferax mediterranei (1)
environmental samples (1)
Drosophila mojavensis (1)
Aspergillus niger (1)
Brassica rapa subsp. chinensis (1)
Human alphaherpesvirus 1 (1)
Aspergillus nidulans (1)

Organisms

Mus musculus (2)
Yersinia pestis (1)
Lactiplantibacillus plantarum (1)

Repository

pride (348)
biostudies-arrayexpress (223)
iProX (171)
MetaboLights (61)
EGA (45)
PAXDB (19)
PeptideAtlas (8)
jPOST (7)
MassIVE (7)
ENA (6)
GPMDB (3)
BioModels (2)
geo (1)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (82)
Brain (29)
Epithelial cell (23)
Heart (17)
Liver (15)
Whole body (13)
Plant cell (12)
Root (10)
Early embryonic cell (8)
Cell suspension culture (8)
Leaf (8)
Lung (8)
Oocyte (7)
Blood plasma (6)
Stem cell (6)
Embryo (6)
HeLa cell (6)
Kidney (6)
Mesenchymal cell (5)
Testis (5)
Fibroblast (5)
Urine (4)
Skin (4)
Macrophage (4)
Hepatocyte (4)
Blood (4)
Others (3)
Smooth muscle cell (3)
Pancreas (3)
Brain (2)

Disease

Disease free (10)
Alzheimer's disease (8)
Breast cancer (7)
Cervix carcinoma (5)
Cardiovascular system disease (5)
Cervical cancer (4)
Type 2 diabetes mellitus (4)
Acute leukemia (4)
Not Available (3)
Stomach cancer (3)
Colon cancer (3)
COVID-19 (2)
Brain disease (2)
Myopia (2)
Pancreatic intraductal papillary-mucinous neoplasm (2)
Bladder transitional cell carcinoma (2)
Multidrug-resistant tuberculosis (1)
Breast secretory carcinoma (1)
Limb ischemia (1)
Eosinophilic esophagitis (1)
Stage IV colorectal cancer (1)
Myocarditis (1)
Cockayne syndrome (1)
Esophagus squamous cell carcinoma (1)
Thyroid cancer (1)
Prion disease (1)
Abnormality of prenatal development or birth (1)
Liver cirrhosis (1)
B-cell lymphoma (1)
Esophageal cancer (1)

Technology Type

Mass Spectrometry (348)
Shotgun proteomics (167)
Bottom-up proteomics (65)
Mass spectrometry (53)
Data-dependent acquisition (33)
Affinity purification coupled with mass spectrometry proteomics (31)
Gel-based experiment (30)
Top-down proteomics (20)
Data-independent acquisition (14)
SWATH MS (13)
SRM/MRM (8)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
NMR spectroscopy (4)
Mass spectrometry assay (4)
Proteogenomics (3)
MSE (3)
All-ion fragmentation (3)
Mass spectrometry imaging (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
AB SOLiD System 3.0 (1)
Illumina Infinium 1.2M (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (22)
Liquid Chromatography MS - positive - reverse phase (17)
Liquid Chromatography MS - positive - hilic (6)
Q Exactive (5)
Liquid Chromatography MS - negative - hilic (5)
Illumina HiSeq 2000 (4)
Illumina Genome Analyzer (3)
Q Exactive Plus (3)
Instrument (3)
LTQ Orbitrap Elite (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - alternating - hilic (3)
Illumina Genome Analyzer II (2)
Illumina HiSeq 2500 (2)
Direct infusion MS - (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Nuclear Magnetic Resonance (NMR) (2)
Direct infusion MS - positive (2)
Bruker (2)
Liquid Chromatography MS - (2)
MS Imaging - (2)
Liquid Chromatography MS - positive (2)
Illumina HiSeq 2000 platform (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
Illumina NovaSeq 6000 (1)
Orbitrap Exploris 240 (1)
Agilent5975C (1)
Liquid Chromatography MS – NEG (1)

Publication Date

2025 (83)
2022 (81)
2024 (66)
2021 (60)
2023 (53)
2013 (50)
2015 (46)
2014 (46)
2026 (43)
2020 (42)
2019 (36)
2011 (32)
2012 (26)
2010 (24)
2018 (23)
2017 (17)
2016 (16)
2009 (10)
2008 (7)
2007 (4)
2005 (1)
2006 (1)

UNIPROT ID/AC

9544.ENSMMUP00000028270 (19)
A0A1D5QWS0_MACMU (19)
9544.ENSMMUP00000034943 (19)
TPIS_MACMU (19)
I0FUX3_MACMU (19)
F7ACB4_MACMU (19)
9544.ENSMMUP00000041218 (19)
F7HT55_MACMU (19)
F7CJE4_MACMU (19)
H9Z5Y2_MACMU (19)
9544.ENSMMUP00000000740 (19)
9544.ENSMMUP00000018047 (19)
H9FPI0_MACMU (19)
F7HSC9_MACMU (19)
9544.ENSMMUP00000028220 (19)
F6SPY0_MACMU (19)
A0A1D5Q3Q0_MACMU (19)
F7EDG2_MACMU (19)
I0FSL5_MACMU (19)
H9Z0R8_MACMU (19)
A0A1D5QFJ9_MACMU (19)
F6PUU7_MACMU (19)
9544.ENSMMUP00000009144 (19)
9544.ENSMMUP00000012790 (19)
F7FLQ1_MACMU (19)
F6VBK4_MACMU (19)
F7E2S4_MACMU (19)
9544.ENSMMUP00000002527 (19)
A0A1D5QZ63_MACMU (19)
9544.ENSMMUP00000015849 (19)

ENSEMBL ID

ENSG00000170477 (5)
ENSG00000247315 (3)
ENSG00000147251 (3)
ENSMUSG00000090272 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000027651 (2)
ENSMUSG00000021039 (2)
ENSMUSP00000141097 (2)
ENSMUSG00000098557 (2)
ENSMUSP00000140201 (1)
ENSMUSP00000141542 (1)

CHEBI ID

CHEBI:30769 (24)
CHEBI:16704 (22)
CHEBI:17596 (21)
CHEBI:17368 (21)
CHEBI:15741 (20)
CHEBI:7916 (20)
CHEBI:16919 (20)
CHEBI:17568 (19)
CHEBI:15891 (19)
CHEBI:16737 (19)
CHEBI:15354 (19)
CHEBI:15756 (19)
CHEBI:16708 (18)
CHEBI:28044 (18)
CHEBI:17154 (17)
CHEBI:16015 (17)
CHEBI:32816 (17)
CHEBI:16828 (17)
CHEBI:15428 (16)
CHEBI:16235 (16)
CHEBI:16335 (16)
CHEBI:17895 (16)
CHEBI:17351 (16)
CHEBI:16040 (15)
CHEBI:16750 (15)
CHEBI:16196 (15)
CHEBI:17509 (15)
CHEBI:18012 (15)
CHEBI:30915 (15)
CHEBI:26271 (14)

Metabolite Name

Creatinine (17)
Choline (16)
Hypoxanthine (16)
Cytosine (15)
Uridine (15)
Betaine (14)
Adenine (14)
Creatine (14)
Uracil (13)
L-Arginine (12)
Adenosine (12)
Guanine (12)
Taurine (11)
L-Tryptophan (11)
Guanosine (11)
Glycine (10)
Valine (10)
L-Proline (10)
Nicotinic acid (10)
L-Histidine (10)
Sphinganine (10)
Isoleucine (10)
L-Tyrosine (10)
Inosine (10)
Phytosphingosine (9)
Nicotinamide (9)
Urocanic acid (9)
Proline (9)
Xanthine (9)
L-Carnitine (9)

First Public Date

2022 (3)
2014 (2)
2020 (1)

Modelling Approach

Population model (1)
Ordinary differential equation model (1)

Lab affiliation

Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (9)
Xiamen University (5)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Proteomics core facility, Seoul National University Hospital (4)
Tianjin Medical University (4)
Hangzhou Medical College (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (3)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (2)
Department of Thoracic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650000, Yunnan, China. (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, Fujian 361102, China (2)
lanzhou university (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (2)
Tianjin Medical University General Hospital (2)
Mayo Clinic, Department of Oncology (2)
University of Colorado, Anschutz Medical Campus (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (2)
Nanjing Medical University (2)
Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Southwest University (2)
Wenzhou Medical University (2)
China agricultural university, preventive veterinary medicine (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)

IsPrivate

False (2)

Submitter Keywords

COVID-19 (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (100)
RNA-seq of coding RNA (48)
ChIP-seq (30)
RNA-seq of non coding RNA (10)
Comparative genomic hybridization by array (9)
Other (5)
Unknown experiment type (4)
Methylation profiling by high throughput sequencing (4)
Methylation profiling by array (3)
Transcription profiling by RT-PCR (2)
Transcription profiling by MPSS (1)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (4741)
2022 (4412)
2023 (4045)
2024 (3716)
2021 (3380)
2020 (2513)
2019 (1817)
2018 (1522)
2017 (1374)
2016 (1110)
2015 (897)
2026 (664)
2014 (655)
2013 (451)
2012 (322)
2011 (227)
2010 (152)
2009 (96)
2008 (60)
2007 (40)
2006 (18)
2005 (17)
2004 (16)
2003 (8)
2002 (8)
2001 (5)
1999 (4)
2000 (2)
1998 (2)

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Short-term changes in the serum metabolome after laparoscopic sleeve gastrectomy and Roux-en-Y gastric bypass

INTRODUCTION: Bariatric surgery is known to be the most effective treatment for weight loss in obese patients and for the rapid remission of obesity-related comorbidities. These short-term improvements result from not only limited digestion or absorption but also dynamic changes ...

2022-03-17 | MTBLS2472 | MetaboLights

Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis

Background The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory r...

ORGANISM(S): Yersinia pestis

2011-10-23 | E-GEOD-26601 | biostudies-arrayexpress

Population genetics of 24 Y-STR loci in Chinese Han population from Jilin Province, Northeast China.

Not available

S-EPMC6825842 | biostudies-literature

Comprehensive genetic structure analysis of Han population from Dalian City revealed by 20 Y-STRs.

Not available

S-EPMC7057124 | biostudies-literature

Genetic Polymorphism Analysis of 24 Y-STRs in a Han Chinese Population in Luzhou, Southwest China.

Not available

S-EPMC10606688 | biostudies-literature

Haplotype diversity and phylogenetic characteristics for Guanzhong Han population from Northwest China via 38 Y-STRs using Yfiler™ Platinum Amplification System.