Hansen Jan J - OmicsDI

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Unknown (467)
Metabolomics (13)
Proteomics (9)
Transcriptomics (6)

Organisms

Homo sapiens (5)
Mus musculus (3)
Saccharomyces cerevisiae (2)
Drosophila melanogaster (1)
Mycobacterium tuberculosis H37Rv (1)
Rattus norvegicus (1)

Repository

MetaboLights (13)
pride (7)
biostudies-arrayexpress (6)
PAXDB (2)

Tissue

Cell culture (2)
Cell lysate (1)
Macrophage (1)
Pancreas (1)
Tonsil (1)
Vitreous humor (1)

Disease

Inflammatory bowel disease (1)
Lung carcinoma (1)
Retinal detachment (1)
Tuberculosis (1)

Technology Type

Mass spectrometry (10)
Mass Spectrometry (7)
Shotgun proteomics (5)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)
MaXis (Bruker) (1)
Nuclear Magnetic Resonance (NMR) - (1)
ESI-ION-TRAP (1)

Publication Date

2023 (6)
2012 (4)
2024 (3)
2021 (3)
2026 (2)
2016 (2)
2006 (2)
2014 (1)
2008 (1)
2007 (1)
2022 (1)
2020 (1)
2018 (1)

UNIPROT ID/AC

2A5D_YEAST (2)
2AAA_YEAST (2)
2ABA_YEAST (2)
4932.YBR084C-A (2)
4932.YDL184C (2)
4932.YDL191W (2)
4932.YEL054C (2)
4932.YER102W (2)
4932.YIL069C (2)
4932.YJR145C (2)
4932.YKR059W (2)
4932.YKR094C (2)
4932.YML026C (2)
4932.YMR143W (2)
4932.YNL030W (2)
4932.YNL162W (2)
4932.YOR133W (2)
4932.YOR182C (2)
4932.YOR312C (2)
4932.YPL090C (2)
4932.YPL220W (2)
4932.YPR043W (2)
4932.YPR080W (2)
4932.YPR132W (2)
6PGD1_YEAST (2)
AAKG_YEAST (2)
AAP1_YEAST (2)
AAP_YEAST (2)
AATM_YEAST (2)
AB140_YEAST (2)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:16335 (2)
CHEBI:16811 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:21949 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73024 (2)
CHEBI:73054 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:132188 (1)
CHEBI:145227 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Adenosine (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Asparagine (2)
Carnitine (2)
Choline (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Methionine (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Serine (2)
Taurocholic acid (2)
Tyrosine (2)
(<i>S</i>)-2-acetolactate (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)

Modification

Not available (1)

Study type

Transcription profiling by array (5)
ChIP-chip by tiling array (1)

Release Date

2024 (56)
2025 (49)
2026 (48)
2022 (45)
2023 (44)
2021 (44)
2020 (39)
2019 (32)
2018 (24)
2017 (23)
2015 (13)
2016 (11)
2011 (11)
2012 (10)
2014 (6)
2010 (6)
2013 (5)
2009 (3)
2008 (1)
2007 (1)
2006 (1)
2004 (1)

Lab affiliation

Aarhus University, Department of Molecular Biology and Genetics (1)
Department of Microbiology, Institute of clinical medicine, University of Oslo, Norway (Group leader ) (1)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (1)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch (1)
Mass Spectrometric Proteomics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Proteomics (1)
Systems Biology of Signal Transduction, German Cancer Research Center Heidelberg, Germany (1)

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On the use of ³J-coupling NMR data to derive structural information on proteins.

Not available

S-EPMC7897194 | biostudies-literature

Chromatin condensing functions of the linker histone C-terminal domain are mediated by specific amino acid composition and intrinsic protein disorder.

Not available

S-EPMC2644900 | biostudies-literature

Extreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

Harmful algal blooms (HABs) of the toxic haptophyte Prymnesium parvum are a recurrent problem in many inland and estuarine waters around the world. Strains of P. parvum vary in the toxins they produce and in other physiological traits associated with HABs, but the genetic basis ...

2023-04-26 | MTBLS5893 | MetaboLights

Human Archaeological Dentin as Source of Polar and Less Polar Metabolites for Untargeted Metabolomic Research: The Case of Yersinia pestis

Metabolomic approaches, such as in clinical applications of living individuals, have shown potential use for solving questions regarding the past when applied to archaeological material. Here, we study for the first time the potential of this Omic approach as applied to metabolites extracted from ar...

2024-03-15 | MTBLS7394 | MetaboLights

Identification of FOXP3-dependent transcripts in human FOXP3 expressing Jurkat T cells

The transcription factor (TF) Forkhead Box P3 (FOXP3) is constitutively expressed in high levels in natural occurring CD4+CD25+ regulatory T cells (nTreg) and is not only the most accepted marker for that cell population, but is considered lineage determinative. Chromatin immunoprecipitation (ChIP) ...

ORGANISM(S): Homo sapiens

2012-11-26 | E-GEOD-37253 | biostudies-arrayexpress

FOXP3 binding sites in promoter regions of human Jurkat T cells

ORGANISM(S): Homo sapiens

2012-11-26 | E-GEOD-37252 | biostudies-arrayexpress

Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in f...

2024-01-24 | MTBLS8575 | MetaboLights

Paroxysmal Atrial Fibrillation Ablation Using a Novel Variable-Loop Biphasic Pulsed Field Ablation Catheter Integrated With a 3-Dimensional Mapping System: 1-Year Outcomes of the Multicenter inspIRE Study.

Not available

S-EPMC10026968 | biostudies-literature

The importance of Haemophilus influenzae in community-acquired pneumonia: an emerging pathogen in the elderly regardless of comorbidities compared to Streptococcus pneumoniae.

Not available

S-EPMC11344911 | biostudies-literature

Effect of fenofibrate on residual beta cell function in adults and adolescents with newly diagnosed type 1 diabetes: a randomised clinical trial.

Not available

S-EPMC11663161 | biostudies-literature