Hata A A - OmicsDI

Show results for

Unknown (1227)
Transcriptomics (150)
Proteomics (48)
Genomics (16)
Metabolomics (12)
Other (3)
Multiomics (1)

Organisms

Homo sapiens (48)
Streptomyces coelicolor (40)
Rhizobium leguminosarum (26)
Streptomyces venezuelae (19)
Streptomyces coelicolor A3(2) (16)
Mus musculus (14)
cellular organisms (6)
Streptomyces griseus (3)
Streptomyces clavuligerus (2)
Streptomyces albus (2)
Arabidopsis thaliana (2)
Rattus norvegicus (2)
Streptomyces natalensis ATCC 27448 (1)
Streptomyces bingchenggensis (1)
Streptomyces avermitilis (1)
Streptomyces sp. SirexAA-E (1)
Streptomyces turgidiscabies (1)
Streptomyces rimosus (1)
Streptomyces scabiei (1)
Streptomyces formicae (1)
Streptomyces lividans (1)
Escherichia coli BW25113 (1)
Mycobacterium tuberculosis (1)
Escherichia coli K-12 (1)
Pseudomonas aeruginosa (1)
Streptomyces (1)
Streptomyces iranensis (1)
Bos taurus (1)
Gallus gallus (1)
Oryctolagus cuniculus algirus (1)

Organisms

Homo sapiens (3)

Repository

biostudies-arrayexpress (162)
jPOST (22)
MassIVE (16)
MetaboLights (12)
pride (10)
PAXDB (3)
ENA (3)
geo (1)

Tissue

Cell culture (3)
Bone marrow (1)
Brain (1)
Epithelial cell (1)
Hepatocyte (1)
Liver (1)
Lung (1)
Permanent cell line cell (1)
Stem cell (1)

Disease

Amyloidosis (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Non-small cell lung carcinoma (1)

Technology Type

Mass spectrometry assay (10)
Mass Spectrometry (10)
Shotgun proteomics (7)
Mass spectrometry (2)
Gel-based experiment (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (9)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Liquid Chromatography MS - positive - reverse-phase (4)
Illumina NovaSeq 6000 (3)
Gas Chromatography MS - positive - high-polarity (3)
Illumina MiSeq (2)
Illumina HiSeq 2500 (2)
6545 Q-TOF LC/MS (2)
Q Exactive (2)
I686 (1)
Dell PowerEdge 630 with Intel Xeon E5-2630 processor (8 cores 16 threads) and 94 GB memory running CentOS Linux release 7.5.1804. (1)
Not applicable (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
6530A Q-TOF LC/MS (1)
Agilent Quadrupole Time-of-Flight LC/MS (1)
Bruker maXis ESI Quadrupole TOF (1)
Impact II (1)
LTQ Orbitrap Discovery (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Orbitrap ID-X (1)
Q Exactive Plus (1)
Thermo Scientific Ultimate 3000 UHPLC coupled to Thermo Scientific Q-Exactive equipped with a HESI-II probe (1)
Vion IMS QTof (1)
Xevo G2 Q-Tof (1)

Publication Date

2010 (36)
2012 (17)
2026 (14)
2013 (14)
2015 (13)
2024 (12)
2023 (12)
2021 (12)
2019 (11)
2016 (11)
2009 (11)
2008 (10)
2014 (9)
2011 (8)
2020 (7)
2018 (7)
2025 (7)
2022 (6)
2005 (4)
2007 (2)
2006 (2)
2017 (1)

UNIPROT ID/AC

3MGH_STRCO (3)
6PGL_STRCO (3)
ACKA_STRCO (3)
ACPX_STRCO (3)
ACSA_STRCO (3)
ACT22_STRCO (3)
ACT3_STRCO (3)
ACYP_STRCO (3)
ADD1_STRCO (3)
ADD2_STRCO (3)
ADDL_STRCO (3)
ADE_STRCO (3)
AFSK_STRCO (3)
AFSQ1_STRCO (3)
AFSQ2_STRCO (3)
AFSR_STRCO (3)
AGAR_STRCO (3)
AHPD_STRCO (3)
ALDH_STRCO (3)
ALF_STRCO (3)
ALLB_STRCO (3)
ALLC_STRCO (3)
ALR_STRCO (3)
AMPA_STRCO (3)
AMPP1_STRCO (3)
AMPP2_STRCO (3)
ANSP_STRCO (3)
APEB_STRCO (3)
APT_STRCO (3)
ARC_STRCO (3)

CHEBI ID

CHEBI:16235 (2)
CHEBI:16551 (2)
CHEBI:16704 (2)
CHEBI:16828 (2)
CHEBI:16857 (2)
CHEBI:17053 (2)
CHEBI:17115 (2)
CHEBI:17191 (2)
CHEBI:18019 (2)
CHEBI:1230 (1)
CHEBI:1307 (1)
CHEBI:131743 (1)
CHEBI:132244 (1)
CHEBI:132991 (1)
CHEBI:133747 (1)
CHEBI:134864 (1)
CHEBI:140940 (1)
CHEBI:140942 (1)
CHEBI:140943 (1)
CHEBI:140945 (1)
CHEBI:140947 (1)
CHEBI:140949 (1)
CHEBI:140951 (1)
CHEBI:140958 (1)
CHEBI:140999 (1)
CHEBI:141061 (1)
CHEBI:141070 (1)
CHEBI:141071 (1)
CHEBI:141072 (1)
CHEBI:141073 (1)

Metabolite Name

L-Tryptophan (4)
Uridine (4)
D-Ribose (3)
Guanine (3)
L-Lysine (3)
L-Threonine (3)
(7Z)-Hexadecenoic acid (2)
1,14-Tetradecanedioic Acid (2)
1-Decanol* (2)
1-Eicosanol (2)
1-Methyladenosine (2)
1-Octadecanol (2)
12-Hydroxyoctadecanoic acid (2)
13-methylmyristic acid (2)
2(3H)-Benzothiazolone (2)
2,2-Dimethylsuccinic acid (2)
2,6-Dimethyl-7-octene-2,3,6-triol (2)
2-Decanol* (2)
2-Hydroxy-4-methylpentanoic acid (2)
2-Methylglutaric acid (2)
3-Hydroxyglutaric acid (2)
3-Hydroxyoctadecanoic Acid (2)
4-Hydroxybenzaldehyde (2)
6-Hydroxyhexanoic acid (2)
9-(Arabinosyl)hypoxanthine (2)
9-Oxononanoic acid (2)
Acetoxyacetic acid (2)
Adenine (2)
Adenosine (2)
Agmatine (2)

First Public Date

2018 (1)
2017 (1)
2016 (1)

Study type

Transcription profiling by array (106)
ChIP-seq (13)
RNA-seq of coding RNA (12)
High-throughput sequencing (6)
Comparative genomic hybridization by array (6)
Methylation profiling by array (6)
Unknown experiment type (4)
Genotyping by array (4)
ChIP-chip by array (2)
One-color microarray (1)
Cell line - One-color microarray (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (145)
2022 (134)
2021 (125)
2024 (124)
2025 (112)
2020 (101)
2019 (83)
2018 (79)
2016 (62)
2015 (58)
2010 (54)
2017 (51)
2014 (50)
2012 (44)
2013 (43)
2011 (31)
2009 (21)
2026 (18)
2008 (17)
2007 (7)
2005 (7)
2004 (7)
2006 (4)
2003 (4)
2000 (3)
1999 (2)
2002 (1)
1998 (1)

Lab affiliation

Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science, Kamikitazawa 2-1-6, Setagaya-ku, Tokyo, 156-8506, Japan. (1)
Department of Medical Biochemistry, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University. (1)
MGH Cancer Center (1)
Medical Proteomics Laboratory, The Institute of Medical Science, The University of Tokyo, Japan (1)
Professor, Department of Laboratory Medicine, UCSF (1)
Program in Molecular and Integrative Physiological Sciences Harvard School of Public Health 665 Huntington Avenue Building 2, Room 221 Boston, MA 02115 USA (1)
Roy J. Carver Dept. of Biochemistry, Biophysics, and Molecular Biology Iowa State University Ames, IA USA (1)
ZMBH University Heidelberg Im Neuenheimer Feld 282 69120 Heidelberg Germany (1)
Zentrum für Molekulare Biologie, Universität Heidelberg, DKFZ-ZMBH Allianz, Heidelberg 69120, Germany (1)

Tags

xref:PubMed:30087143 (1)
xref:PubMed:26828195 (1)
xref:PubMed:37407818 (1)
xref:PubMed:28783173 (1)
xref:EuropePMC:PMC13072959 (1)

Previous page
1 / 146
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 146
Next page

Sort by:

Relevance

Page size

Seed Metabolome Analysis of a Transgenic Rice Line Expressing Cholera Toxin B-subunit

Rice (Oryza sativa L.) is a candidate crop for production of plant-based vaccines by genetic engineering technologies. MucoRice-CTB has been developed as a rice-seed-based vaccine against cholera by transgenic expression of modified cholera toxin B-subunit (CTB) under the RNA interference (RNAi)-med...

2017-08-30 | MTBLS437 | MetaboLights

An Arabidopsis Mutant Resistant to Thaxtomin A, a Cellulose Synthesis Inhibitor from Streptomyces Sp

Thaxtomin A is a phytotoxin produced by Streptomyces scabies and other Streptomyces species, the causative agents of common scab disease in potato and other taproot crops. At nanomolar concentrations, thaxtomin causes dramatic cell swelling, reduced seedling growth, and inhibition of cellulose synth...

ORGANISM(S): Arabidopsis thaliana

2005-12-19 | E-GEOD-3873 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Mutant Resistant to Thaxtomin A, a Cellulose Synthesis Inhibitor from Streptomyces

ORGANISM(S): Arabidopsis thaliana

2010-06-06 | E-SMDB-2204 | biostudies-arrayexpress

Hata-Yanagiya physical activity calculation system: a novel global positioning system-based method for accurate estimation of oxygen consumption during walking and running.

Not available

S-EPMC11757879 | biostudies-literature

MS-based determination of NELF-A phosphorylation

LC-MS/MS analysis of Flag-NELF-A purified from TPA-stimulated HEK293 cells

ORGANISM(S): Homo Sapiens (human)

2022-11-15 | PXD038094 | JPOST Repository

A novel obligate cultivation mutualism between damselfish and Polysiphonia algae.

Not available

S-EPMC1833977 | biostudies-literature

Chevrette et al 2019 Insect-associated Streptomyces

Paper title: The antimicrobial potential of Streptomyces from insect microbiomes. Author list: Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo ...

ORGANISM(S): Pseudonocardia Kitasatospora Streptomyces Gordonia <actinomycete>

2019-12-18 | MSV000084723 | MassIVE

Genome-wide distribution of AdpA, a global regulator for secondary metabolism and morphological differentiation in Streptomyces, revealed the extent and complexity of the AdpA regulatory network.

This SuperSeries is composed of the following subset Series: GSE33992: Streptomyces griseus transcriptome analysis in solid culture with delta adpA, encoding a global transcriptional regulator involved in morphological differentiation and secondary metabolism GSE33993: Streptomyces griseus transcrip...

ORGANISM(S): Streptomyces griseus

2012-04-03 | E-GEOD-33994 | biostudies-arrayexpress

The genome of Streptomyces rimosus shows a novel structure compared to other Streptomyces

This study compared the genome of Streptomyces rimosus rimosus against that of Streptomyces coelicolor. It also compared 4 strains with changes in oxytetracycline production and derived from G7, the type strain, against G7. Duplicate samples, each replicate may be found in the corresponding suppleme...

ORGANISM(S): Streptomyces rimosus

2010-05-26 | E-GEOD-10126 | biostudies-arrayexpress

Transcriptional analysis between Streptomyces clavuligerus ATCC 27064 and a mutant altered in antibiotic production

The objective was to analyze the differential expression between the wild strain and the Streptomyces clavuligerus ΔclaR::aac mutant Six experimental conditions were assayed, two strains (Streptomyces clavuligerus ATCC 27064, S. clavuligerus ΔclaR::aac) in three culture times (22.5h, 46.5h and 60 ...

ORGANISM(S): Streptomyces clavuligerus

2015-08-05 | E-GEOD-66683 | biostudies-arrayexpress

Previous page
1 / 146
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 146
Next page

Sort by:

Relevance

Page size

1456 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets