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TranscriptomicsTranscription profiling of mouse E8.5 wild-type and 3 E8.5 Tcof1+/- littermate embryos (Treacher Collins Syndrome)
The object of this study was to identify genes transcriptionally upregulated and downregulated in response to Tcof1 haploin-sufficiency during mouse embryogensis Experiment Overall Design: Total RNA was extracted from 3 E8.5 wild-type and 3 E8.5 Tcof1+/- littermate embryos using the RNeasy Mini Pro...
ORGANISM(S): Mus musculus 
2008-06-11 | E-GEOD-10167 | biostudies-arrayexpress
TranscriptomicsMapping interactions for the TNIP2 hub protein
This experiment analyzes the set of RNAs copurifying with the protein TNIP2 (amino acids 196-346) HEK293 cells were transfected with constructs expressing either Halo tag (controls) or Halo-TNIP2 196-346. Total RNA was purified from an aliquot of the whole cell extract (Input samples). Halo-tagged p...
ORGANISM(S): Homo sapiens 
2016-10-24 | E-GEOD-79656 | biostudies-arrayexpress
TranscriptomicsControlling for gene expression changes in transcription factor protein networks.
The development of affinity purification technologies together with mass spectrometric analyses of the purified protein mixtures (AP-MS) has been used both to identify new protein-protein interactions and to define the subunit composition of protein complexes. Transcription factor protein interactio...
ORGANISM(S): Homo sapiens 
2014-04-24 | E-GEOD-57027 | biostudies-arrayexpress
Proteomics,MultiomicsAP-MS MudPIT run of yeast R2TP complex
File name explanation: Sc_Rtt101_TAP_P1_Ti_101: Sc = Saccharomyces cerevisiae (specie) Rtt101 = bait protein TAP = tag L1 = lab instrument name(LTQ1) P1 = biological replicate 1 Ti = LysC+Trypsin digestion 101 = MudPIT run 1 from 1st technical replicate rvb1_his_sf21_E1_P1_Ti_101: Sf21 = Spodopt...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
MSV000079332 | MassIVE
Proteomics,MultiomicsAP-MS MudPIT run of yeast R2TP complex
File name explanation: Sc_Rvb1_TAP_P1_Ti_101: Sc = Saccharomyces cerevisiae (specie) Rvb1 = bait protein TAP = tag L1 = lab instrument name(LTQ1) P1 = biological replicate 1 Ti = LysC+Trypsin digestion 101 = MudPIT run 1 from 1st technical replicate rvb1_his_sf21_E1_P1_Ti_101: Sf21 = Spodoptera ...
ORGANISM(S): Spodoptera Frugiperda (ncbitaxon:7108) Saccharomyces Cerevisiae (ncbitaxon:4932) 
2015-05-31 | MSV000079137 | MassIVE
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