Hayden P P - OmicsDI

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Unknown (551)
Transcriptomics (32)
Genomics (10)
Proteomics (5)
Metabolomics (3)

Organisms

Homo sapiens (26)
Mus musculus (12)
Solanum tuberosum (2)
Allium cepa (1)
Brassica rapa (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (34)
EGA (6)
pride (4)
MetaboLights (3)
ENA (2)
MassIVE (1)

Tissue

B cell (1)
Blood platelet (1)
Cell culture (1)
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Disease

Burn/trauma (1)
Cardiovascular system disease (1)

Technology Type

Mass Spectrometry (4)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
Shotgun proteomics (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Mass spectrometry (1)
Data-independent acquisition (1)

Instrument Platform

Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
MALDI Synapt G2-S HDMS (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Tandem Gas Chromatography MS - positive (1)

Publication Date

2008 (9)
2026 (5)
2011 (5)
2012 (4)
2010 (4)
2016 (3)
2015 (2)
2022 (2)
2018 (1)
2014 (1)
2013 (1)
2009 (1)
2007 (1)
2024 (1)
2021 (1)
2020 (1)

CHEBI ID

CHEBI:108517 (1)
CHEBI:108633 (1)
CHEBI:109455 (1)
CHEBI:109896 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:127309 (1)
CHEBI:131346 (1)
CHEBI:131428 (1)
CHEBI:131440 (1)
CHEBI:131739 (1)
CHEBI:131924 (1)
CHEBI:131976 (1)
CHEBI:131977 (1)
CHEBI:131989 (1)
CHEBI:131991 (1)
CHEBI:131993 (1)
CHEBI:132001 (1)
CHEBI:132002 (1)
CHEBI:132004 (1)
CHEBI:132007 (1)
CHEBI:132283 (1)
CHEBI:132288 (1)
CHEBI:132491 (1)
CHEBI:132500 (1)
CHEBI:132539 (1)
CHEBI:132544 (1)
CHEBI:132559 (1)
CHEBI:132561 (1)
CHEBI:133456 (1)

Metabolite Name

Caffeine (2)
Histidine (2)
L-Proline (2)
Phenylalanine (2)
Proline (2)
Tryptophan (2)
Tyrosine (2)
Urea (2)
(+)-Allopumiliotoxin 267A (1)
(+)-Eudesmin (1)
(-)-Lupinine (1)
(.+/-.)-Laudanosine (1)
(1-butylheptyl)-Benzene (1)
(1-methyldecyl)-Benzene (1)
(1-methyldodecyl)-Benzene (1)
(1R,2S)-1-(7,8-Dihydro-6-pteridinyl)-1,2-propanediol (1)
(1S,5R)-5-Isopropenyl-2-methyl-2-cyclohexen-1-yl beta-D-glucopyranoside (1)
(2E)-hexadecenoylcarnitine (1)
(2E,2'E)-3,3'-[2,4-Bis(1,3-benzodioxol-5-yl)-1,3-cyclobutanediyl]bis[1-(1-piperidinyl)-2-propen-1-one] (1)
(2R,5R,6R)-3-[(1E,3E)-hepta-1,3-dien-1-yl]-5,6-dihydroxy-2-(hydroxymethyl)cyclohexan-1-one (1)
(2S)-3-Hydroxy-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Phenyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-4-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)pentanoic acid (non-preferred name) (1)
(2S)-5-Carbamimidamido-2-(2-oxo-1-azetidinyl)pentanoic acid (1)
(4-Ethoxyphenyl)urea (1)
(4R)-4-{[(4R)-4-Hydroxy-1-methyl-L-prolyl]oxy}-1-methyl-L-proline (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one*;*Hopantenic acid (1)
(5Z)-3-aminonon-5-enoic acid (1)

First Public Date

2024 (1)
2021 (1)

Study type

Transcription profiling by array (23)
Unknown experiment type (3)
Genotyping by array (2)
DNA-seq (2)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (64)
2021 (55)
2025 (53)
2019 (47)
2020 (46)
2024 (41)
2023 (41)
2018 (36)
2016 (24)
2015 (22)
2014 (22)
2012 (21)
2017 (21)
2013 (20)
2010 (19)
2008 (17)
2011 (13)
2026 (9)
2009 (5)
2006 (3)
2005 (3)
2007 (2)
2004 (1)

Lab affiliation

Proteas Bioanalytics Inc. (1)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (1)
SBBS, Conway Institute, UCD, Belfield, Dublin (1)
scripps research institute Cravatt Lab (1)

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Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies

The aim of this study was to identify eQTL in Brassica rapa grown under altered soil phosphorus (P) supply, to understand better the genetic architecture of P-use efficiency (PUE) in plants. Recombinant inbred lines (RILs) of the BraIRRI mapping population were grown at adequate and growth-limiting ...

ORGANISM(S): Brassica rapa

2011-06-29 | E-GEOD-27052 | biostudies-arrayexpress

Field test for diagnostic P deficiency genes

ORGANISM(S): Solanum tuberosum

2012-04-12 | E-MTAB-634 | biostudies-arrayexpress

Transcriptional response to P withdrawal in potato leaves

ORGANISM(S): Solanum tuberosum

2012-04-12 | E-MTAB-629 | biostudies-arrayexpress

Assessing Statistical Significance in Microarray Experiments Using the Distance Between Microarrays

We propose a method to compare the location and variability of gene ex-pression between two groups of microarrays using a permutation test based on the pairwise distance between microarrays. The microarrays could be samples from distinct clinical or biological populations or microarrays prepared at ...

ORGANISM(S): Mus musculus

2010-09-13 | E-GEOD-9424 | biostudies-arrayexpress

Diversity in expression of phosphorus (P) responsive genes in Cucumis melo L.

Not available

S-EPMC3334927 | biostudies-literature

Phylogeography of Pogonomyrmex barbatus and P. rugosus harvester ants with genetic and environmental caste determination.

Not available

S-EPMC4541987 | biostudies-literature

RNase P protein subunit Rpp29 represses histone H3.3 nucleosome deposition.

Not available

S-EPMC4814222 | biostudies-literature

Ethylene and 1-MCP differentially regulate gene expression during onion (Allium cepa L.) sprout suppression

Onion is regarded as non-climacteric. In onion, ethylene can suppress sprouting however, the ethylene binding inhibitor, 1-MCP can also suppress sprout growth although it is unknown how ethylene and 1-MCP elicit the same response. In this study, onion bulbs were treated with 10 μL L-1 ethylene or 1...

ORGANISM(S): Allium cepa

2011-06-29 | E-GEOD-27132 | biostudies-arrayexpress

Fertility protection during chemotherapy treatment by boosting the NAD(P)+ metabolome

Not available

S-SCDT-10_1038-S44321-024-00119-W | biostudies-other

Pseudomonas aeruginosa lasR mutants in young cystic fibrosis patients

Pseudomonas aeruginosa undergoes genetic change during chronic infection of the airways of cystic fibrosis (CF) patients. One common change is mutation of lasR. LasR is a transcriptional regulator that responds to one of the quorum sensing signals in P. aeruginosa, and regulates acute virulence fa...

ORGANISM(S): Pseudomonas aeruginosa

2010-06-30 | E-GEOD-5560 | biostudies-arrayexpress

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601 Results

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