He Jie J - OmicsDI

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Unknown (93)
Proteomics (61)
Transcriptomics (9)
Genomics (9)
Multiomics (3)
Metabolomics (1)

Organisms

Homo sapiens (38)
Andropogon gerardi (17)
Bacteria (17)
Bartonella quintana JK 31 (17)
Canis lupus familiaris (17)
Clavibacter nebraskensis NCPPB 2581 (17)
Cnidaria (17)
Ensifer adhaerens (17)
Human alphaherpesvirus 1 strain 17 (17)
Human alphaherpesvirus 1 strain KOS (17)
Human betaherpesvirus 5 (17)
Human herpesvirus 2 strain 186 (17)
Mus musculus (8)
Caenorhabditis elegans (1)
Arabidopsis thaliana (1)
502593 (1)
Canis lupus familiaris (1)
Capsella rubella (1)
Cordyceps cicadae (1)
Cordyceps militaris (1)
Cucurbita ficifolia (1)
Escherichia coli (1)
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Mus sp. (1)
Ophiocordyceps sinensis (1)
Pseudomonas ogarae (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Xanthomonas oryzae pv. oryzae PXO99A (1)

Organisms

Mus musculus (1)

Repository

iProX (41)
pride (17)
biostudies-arrayexpress (9)
EGA (7)
PeptideAtlas (3)
geo (1)
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ENA (1)

Tissue

Others (3)
Cell culture (3)
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Leaf (1)
Lung (1)
Muscle (1)
Seedling (1)

Disease

Prostate adenocarcinoma (2)
Cervix carcinoma (1)
Renal clear cell carcinoma (1)
Skin cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
SWATH MS (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry (1)
Affinity proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

LTQ Orbitrap Elite (2)
Computater Servers UPPMAX-SNIC. (1)
Illumina Tru-seq RNA (1)
NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
Illumina HiSeq 2500 (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive - hilic (1)
QExactive (1)

Publication Date

2022 (8)
2014 (6)
2023 (6)
2026 (5)
2025 (4)
2021 (4)
2017 (3)
2024 (3)
2020 (3)
2019 (3)
2015 (2)
2007 (2)
2013 (1)
2012 (1)
2008 (1)
2018 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:162592 (1)
CHEBI:162789 (1)
CHEBI:162584 (1)
CHEBI:195594 (1)
CHEBI:195593 (1)
CHEBI:194720 (1)
CHEBI:195590 (1)
CHEBI:195595 (1)
CHEBI:162381 (1)
CHEBI:162608 (1)
CHEBI:175878 (1)
CHEBI:163986 (1)
CHEBI:195589 (1)
CHEBI:178676 (1)
CHEBI:163801 (1)
CHEBI:193726 (1)
CHEBI:195588 (1)
CHEBI:195587 (1)
CHEBI:195586 (1)
CHEBI:73904 (1)
CHEBI:181741 (1)
CHEBI:162277 (1)
CHEBI:195585 (1)
CHEBI:163973 (1)
CHEBI:93923 (1)
CHEBI:195584 (1)
CHEBI:195583 (1)
CHEBI:183415 (1)
CHEBI:195581 (1)
CHEBI:195579 (1)

Metabolite Name

Pro Pro Gly (1)
Pro Val Glu (1)
Pro Pro Asp (1)
2'-Hydroxy-3,4',5',7,8-pentamethoxyflavone (1)
Phenylacetohydroximoyl-glutathione (1)
Pro Ile Asn (1)
Simmondsin 2'-ferulate (1)
Gly Leu Glu (1)
Serine glutamate (1)
Gly Gly Leu (1)
D-Beta-Homophenylalanine (1)
Pro Pro Ile (1)
Cis-Entacapone (1)
(4aS,5aS,12aS)-7-chloro-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboximidic acid (1)
Delta8-Tetrahydrocannabinol (1)
Delta-Tridecanolactone (1)
Xi-5-Dodecanolide (1)
N-octanoyl-L-Homoserine lactone (1)
N,N-Dimethyldecylamine oxide (1)
1-Heptadecanoyl-sn-Glycero-3-Phosphocholine (1)
Indole-3-acetyl-leucine (1)
Lysine phosphoester (1)
Trans-zeatin riboside monophosphate (1)
Methyl 4-mercaptobutyrimidate (1)
Diphenol glucuronide (1)
Aspidocarpine (1)
3,4-Dimethyl-5-pentyl-2-furantridecanoic acid (1)
3-(1-Pyrazolyl)-Alanine (1)
Pro Glu Leu (1)
Pro Glu Val (1)

First Public Date

2014 (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (2)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (18)
2025 (13)
2022 (13)
2021 (11)
2020 (10)
2024 (8)
2019 (5)
2017 (4)
2015 (3)
2026 (3)
2016 (3)
2014 (2)
2013 (2)
2007 (2)
2018 (2)
2012 (1)
2008 (1)
2011 (1)

Lab affiliation

Department of Clinical Pharmacy, University of Michigan (2)
Institute For Systems Biology (2)
Academy of Pharmacy, Xi’an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Department of Chemistry, College of Science,Southern University of Science and Technology,Shenzhen518055, China (1)
Department of Chemistry, Washington University in St. Louis (1)
Immunogenetics Laboratory, Shenzhen Blood Center, Shenzhen 518040, China (1)
Institute for Systems Biology (1)
Institute of Fruit Tree Research. Guangdong Academy of Agricultural Sciences. Tianhe District, Guangzhou 510640, Guangdong Province, China (1)
Institute of Systems Biology, Seattle, WA. (1)
MCTP, Rogel cancer center, Ann Arbor, Michigan, 48109 (1)
MCTP,Rogel cancer center, Ann Arbor, Michigan, 48109 (1)
Shanghai Jiao Tong University (1)
Shenzhen Key Laboratory of Plant Genetic Engineering and Molecular Design, Institute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China (1)
The second affiliated Hospital, Guangzhou Medical University (1)

Tags

xref:PubMed:18382688 (1)

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Transcription profiling of mouse hippocampus after maternal treatment with saline or 20 mg/kg cocaine twice daily on gestational days 8-19

We explored the hypothesis that maternal cocaine exposure could alter the fetal epigenetic machinery sufficiently to cause lasting neurochemical and functional changes in the offspring. These data were used as preliminary results for paper:; Maternal cocaine administration in mice alters DNA methy...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-6651 | biostudies-arrayexpress

Whole Genome array hippocampus_cocaine

We explored the hypothesis that maternal cocaine exposure could alter the fetal epigenetic machinery sufficiently to cause lasting neurochemical and functional changes in the offspring. These data were used as preliminary results for paper: Maternal cocaine administration in mice alters DNA methylat...

ORGANISM(S): Mus musculus

2007-01-09 | GSE6651 | GEO

He-Jie-Shen-Shi Decoction as an Adjuvant Therapy on Severe Coronavirus Disease 2019: A Retrospective Cohort and Potential Mechanistic Study.

Not available

S-EPMC8250425 | biostudies-literature

Qing-Xin-Jie-Yu Granule attenuates myocardial infarction-induced inflammatory response by regulating the MK2/TTP pathway.

Not available

S-EPMC11849043 | biostudies-literature

Huang Lian Jie Du Decoction enhances the anti-tumor efficacy of immune checkpoint inhibitors by activating TLR7/8 signalling in melanoma.

Not available

S-EPMC11007990 | biostudies-literature

Dynamical Variations of the Global COVID-19 Pandemic Based on a SEICR Disease Model: A New Approach of Yi Hua Jie Mu.