He Yu Y - OmicsDI

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Unknown (5786)
Proteomics (203)
Genomics (70)
Transcriptomics (40)
Metabolomics (19)
Multiomics (6)
Models (2)
Other (1)

Organisms

Homo sapiens (139)
Mus musculus (20)
Arabidopsis thaliana (6)
Zea mays (4)
Severe acute respiratory syndrome coronavirus 2 (4)
Sus scrofa domesticus (2)
Rattus (1)
Rhodococcus opacus (1)
Brassica rapa subsp. chinensis (1)
Bombyx mori (1)
Bacillus thuringiensis (1)
Siniperca chuatsi (1)
Xenopus laevis (1)
Aedes aegypti (1)
Rattus norvegicus (1)
Sus scrofa (1)
Danio rerio (1)
12461 (1)
Beta vulgaris subsp. vulgaris (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Capsella rubella (1)
Manihot esculenta (1)
Medicago truncatula (1)
Klebsiella pneumoniae subsp. pneumoniae HS11286 (1)
wastewater metagenome (1)
Cucumis sativus (1)
Pseudomonas aeruginosa PAO1 (1)
Macaca fascicularis fascicularis (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)

Repository

pride (106)
iProX (76)
EGA (57)
biostudies-arrayexpress (53)
MetaboLights (19)
PeptideAtlas (14)
MassIVE (6)
BioModels (2)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (32)
Plasma Non-glyco (11)
Brain (8)
Whole body (5)
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Cell suspension culture (4)
Stem cell (4)
Others (3)
Malignant cell (3)
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Esophagus (2)
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Blood cell (2)
Blood (2)
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Decidua (1)
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Preadipocyte (1)
Mycelium (1)
Small intestine (1)

Disease

Breast cancer (4)
Disease free (3)
Brain glioblastoma multiforme (2)
Prostate adenocarcinoma (2)
Cervix carcinoma (2)
Not Available (1)
Eosinophilic esophagitis (1)
Vascular dementia (1)
Idiopathic pulmonary fibrosis (1)
Cerebrovascular disease (1)
Cognitive disorder (1)
Non-small cell lung carcinoma (1)
Lung cancer (1)
Periodontitis (1)
Brain cancer (1)
Alzheimer's disease (1)
Liver cancer (1)
Type 2 diabetes mellitus (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (106)
Shotgun proteomics (51)
Mass spectrometry (17)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-dependent acquisition (9)
Gel-based experiment (8)
Data-independent acquisition (4)
Top-down proteomics (4)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry assay (2)
Mass spectrometry imaging (2)
SWATH MS (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

TripleTOF 5600 (12)
Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - positive - reverse phase (9)
Illumina NovaSeq 6000 (4)
MS:1000031 (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Elite (2)
Illumina HiSeq 2500 (1)
Instrument (1)
Orbitrap Ascend (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Astral (1)
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TSQ Quantum XLS (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - (1)
Exactive (Thermo Scientific) (1)
API 4000 QTRAP (AB Sciex) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
QExactive (1)

Publication Date

2025 (30)
2022 (26)
2021 (25)
2023 (24)
2026 (18)
2024 (17)
2014 (15)
2015 (14)
2013 (12)
2019 (12)
2020 (11)
2016 (9)
2012 (6)
2010 (6)
2018 (6)
2017 (4)
2009 (3)
2005 (1)
2011 (1)
2008 (1)
2006 (1)

UNIPROT ID/AC

Q9Y3U8 (14)
Q9UN86-2 (14)
Q9UN86 (14)
Q9H0A0 (14)
Q9BQ39 (14)
Q969Q0 (14)
P28028 (1)
Q8C180 (1)
P62716 (1)
P63331 (1)
Q8K4S7 (1)
D4A244 (1)
Q63768 (1)
Q4QQV2 (1)
Q64346 (1)
Q5M824 (1)
P62994 (1)
P47736 (1)
Q62636 (1)
Q9QYV3 (1)
P63086 (1)
P36506 (1)
Q01986 (1)
Q99MC6 (1)
P11345 (1)
Q9Z1I1 (1)
P35739 (1)
P25427 (1)
Q9QX70 (1)
P07522 (1)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000247315 (7)
ENSG00000147251 (4)

CHEBI ID

CHEBI:16704 (5)
CHEBI:50202 (4)
CHEBI:28527 (4)
CHEBI:28875 (4)
CHEBI:16610 (4)
CHEBI:30763 (4)
CHEBI:17295 (4)
CHEBI:16393 (4)
CHEBI:28865 (4)
CHEBI:28834 (4)
CHEBI:15891 (4)
CHEBI:16709 (4)
CHEBI:17509 (4)
CHEBI:17596 (4)
CHEBI:16335 (4)
CHEBI:16919 (4)
CHEBI:17154 (4)
CHEBI:16796 (3)
CHEBI:28931 (3)
CHEBI:18176 (3)
CHEBI:16259 (3)
CHEBI:10072 (3)
CHEBI:73067 (3)
CHEBI:18344 (3)
CHEBI:73054 (3)
CHEBI:16411 (3)
CHEBI:28499 (3)
CHEBI:16547 (3)
CHEBI:15996 (1)
CHEBI:17552 (1)

Metabolite Name

Naringenin (3)
Genistein (3)
Kaempferol (3)
Rutin (3)
Taurocholic acid (3)
Stearic acid (3)
Myristic acid (3)
Taurine (3)
Inosine (3)
Uridine (3)
PGE3 1,15-lactone (2)
2-tridecene-4,7-diynal (2)
13E-Docosenamide (2)
Eicosane (2)
Heneicosane (2)
6-[3]-ladderane-1-hexanol (2)
Dihydroresveratrol (2)
Wogonin (2)
Hepoxilin A3 (2)
Quercetin (2)
15-deoxy-delta-12,14-PGJ2 (2)
12-oxo-ETE (2)
Aplidiasphingosine (2)
Phloretin (2)
D-Fructose (2)
Valine (2)
Sinapic acid (2)
Glycolic acid (2)
Ferulic acid (2)
Chrysin (2)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

-17.026549 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (16)
Methylation profiling by high throughput sequencing (9)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (3)
RNA-seq of non coding RNA (2)
Genotyping by array (1)
ScATAC-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (942)
2022 (809)
2023 (777)
2024 (756)
2021 (619)
2020 (415)
2019 (315)
2018 (293)
2017 (186)
2016 (151)
2015 (136)
2014 (119)
2026 (104)
2013 (67)
2012 (51)
2011 (32)
2010 (30)
2009 (17)
2007 (3)
2005 (3)
2002 (3)
2008 (2)
2006 (2)
2004 (2)
2003 (2)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Xiamen University (3)
Zhejiang University (3)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (2)
lanzhou university (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (2)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
The Institute of Cancer Research (2)
Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
Fudan University, Shanghai, China (1)
Key Laboratory of Neuroregeneration, Nantong University, Nantong, China. (1)
aCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan Province, PR China (1)
Department of cardiothoracic surgery, the First Affiliated Hospital of Chengdu Medical College (1)
School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong, China. (1)
National key laboratory of medical immunology, Naval medical university, Shanghai, China (1)
Biological mass spectrometry and proteomics group, Department of Chemistry High-resolution mass spectrometry platform, Core research facilities Guangdong provincial key laboratory for cell microenvironment and disease research Southern University of Science and Technology (SUSTech) 403, 1st research building, 1088 Xueyuan Rd., Nanshan, Shenzhen (1)
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, PRC (1)
Central Laboratory, Wuxi Maternity and Child Health Care Hospital Affiliated to Nanjing Medical University (1)
The Fifth Affiliated Hospital of Guangzhou Medical University, China (1)
College of Food Science & Technology, Nanjing Agricultural University, Weigang 1#, Nanjing, 210095, P.R. China (1)
Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Lindwurmstr. 4 80337 Munich, Germany (1)
Laboratory of Molecular Pharmacology and Drug Discovery, Institute of Chinese Materia Medica, The Fourth Clinical Medical College, Guangzhou University of Chinese Medicine, Shenzhen, Guangdong 518033, China (1)
Assistant Member of Staff, The Forsyth Institute (1)
MOE Key Laboratory of Gene Function and Regulation, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China (1)
Department of Analytical Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)

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DNA Cytosine Hydroxymethylation Levels Are Distinct Among Peripheral Blood Leukocytes

Peripheral blood leukocytes are the most commonly used surrogates to study epigenome-induced risk and epigenomic response to disease related stress. We considered the hypothesis that the TET enzyme catalyzed hydroxymethylation of 5mC to 5hmC might vary among peripheral blood leukocytes and reflect t...

ORGANISM(S): Homo sapiens

2016-07-05 | E-GEOD-70519 | biostudies-arrayexpress

Subsets of visceral adipose tissue nuclei with discrete levels of 5-hydroxymethylcytosine

We explored the hypothesis that adipose tissue contains epigenetically distinct subpopulations of adipocytes that are differentially potentiated to record cellular memories of their environment. Adipocytes are large, fragile, and technically difficult to efficiently isolate and fractionate. We devel...

ORGANISM(S): Sus scrofa

2016-07-20 | E-GEOD-73684 | biostudies-arrayexpress

Protocol for a parallel assignment prospective, randomised, double-blinded, placebo-controlled trial to evaluate the efficacy of 0.01% atropine for near work-induced transient myopia and myopic progression in China.

Not available

S-EPMC10748874 | biostudies-literature

Achieving Effective Multimodal Imaging with Rare-Earth Ion-Doped CaF₂ Nanoparticles.

Not available

S-EPMC9024546 | biostudies-literature

Protocol for a parallel assignment prospective, randomised, comparative trial to evaluate the safety and efficacy of intense pulsed light (IPL) combined with 3% diquafosol (DQS) ophthalmic solution in dry eye syndrome.

Not available

S-EPMC10465902 | biostudies-literature

Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros

5-methylcytosine is a major epigenetic modification sometimes called "the fifth nucleotide". However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes including zebrafish gametes and early embryos. The...

ORGANISM(S): Danio rerio

2013-05-20 | E-GEOD-44075 | biostudies-arrayexpress

Mechanisms of He Shi Yu Lin formula in treating premature ovarian insufficiency: insights from network pharmacology and animal experiments.

Not available

S-EPMC11674109 | biostudies-literature

Molecular mechanism of Dang-Shen-Yu-Xing decoction against Mycoplasma bovis pneumonia based on network pharmacology, molecular docking, molecular dynamics simulations and experimental verification.

Not available

S-EPMC11458528 | biostudies-literature

Relationship between ocular surface pain and corneal nerve loss in dry eye diabetics: a cross-sectional study in Shenyang, China.

Not available

S-EPMC10533686 | biostudies-literature

Unveiling the Genetic and Phenotypic Landscape of a Chinese Cohort With Retinitis Pigmentosa.