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TranscriptomicsJHI Sl Pc JJ timecourse
Phytophthora species are a destructive group of filamentous plant pathogens, which have a global distribution and devastating effect on a wide range of plants important to agriculture and natural ecosystems. Throughout the infection cycle, Phytophthora secrete an effector repertoire into its host to...
ORGANISM(S): Phytophthora capsici 
2013-03-24 | E-MTAB-1295 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Lolium perenne leaves and roots grown in low and normal phosphorus conditions
Transcriptional analysis of phosphorus-starved ryegrass tissues using barley 44k microarrays.
This experiment was updated on 8th September 2010 to add organism part (leaf or root) information
ORGANISM(S): Lolium perenne 
2010-09-09 | E-TABM-943 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of wheat and barley to anchor physical and genetic maps in wheat using a barley array
Background Because of its size, allohexaploid nature and high repeat content, the wheat genome has always been perceived as too complex for efficient molecular studies. However, we recently constructed the first physical map of a wheat chromosome (3B). But gene mapping is still laborious in wheat be...
ORGANISM(S): Hordeum vulgare 
2010-12-02 | E-TABM-1011 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization by array of ryegrass (Lolium perenne) strains
Genome hybridisation of ryegrass to barley 44k microarrays
ORGANISM(S): Lolium perenne 
2010-09-01 | E-TABM-950 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization by array of barley BAC pools to anchor BACs physical and genetic maps
BAC pool DNA hybridisation of barley to 44k Agilent microarrays. We have used two-channel Agilent expression microarrays to address thousands of gene sequences to individual BAC clones and contigs that form part of an emerging physical map of the large and unsequenced 5300 Mbp barley genome. By usi...
ORGANISM(S): Hordeum vulgare 
2010-12-02 | E-TABM-1017 | biostudies-arrayexpress
TranscriptomicsGenome-wide QTL analysis in combination with a genetical-genomics approach reveals new candidate genes for the control of tuber carotenoid content in potato
The aim of this study was to conduct a genome-wide analysis for constituent tuber carotenoid QTL. Using a genetical genomics approach samples from clones with similar carotenoid traits were bulked and patterns of gene expression were measured for each bulk by microarray analysis. Variation of gene e...
ORGANISM(S): Solanum tuberosum 
2011-12-26 | E-TABM-1200 | biostudies-arrayexpress
TranscriptomicsRelating differences in the colonisation potential of verotoxigenic Escherichia coli (VTEC) for plant hosts to wholescale genes in gene expression
Verotoxigenic Escherichia coli (VTEC) are a leading cause of food-borne illness. Fruit and vegetables are recognised as an important source of the pathogen and can account for ~ 25 % of food-borne VTEC outbreaks, globally. The ability of VTEC to colonise leaves and roots of leafy vegetables, spinach...
ORGANISM(S): Escherichia coli O157:H7 str. Sakai 
2016-08-01 | E-MTAB-3249 | biostudies-arrayexpress
TranscriptomicsJHI Pa MC mutants
Plant cell wall degrading enzymes (PCWDEs) are key virulence determinants in the pathogenesis of the potato pathogen, Pectobacterium atrosepticum. In this study, we report the impact on virulence of a transposon insertion mutation in the metJ gene that codes for the repressor of the methionine biosy...
ORGANISM(S): Pectobacterium atrosepticum 
2012-11-02 | E-MTAB-1167 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiles associated with altered StCEN expression in non-swelling stolons from RNAi and overexpressing potato (subspecies Andigena) transgenic lines demonstrating altered tuberization phenotypes
Two independent Solanum tuberosum ssp. Andigena ADG StCEN RNAi and two ADG StCEN 35S overexpressing OE transgenic lines and a wild type WT control were grown under standard glasshouse conditions for 6 weeks prior to being moved to controlled growth cabinet conditions. Plants were grown under 4 diffe...
ORGANISM(S): Solanum tuberosum 
2020-07-01 | E-MTAB-8346 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of pigmented and non-pigmented tubers of Solanum tuberosum
Transcriptional analysis of pigmented and non-pigmented potato tuber flesh using POCI 44k microarrays
ORGANISM(S): Solanum tuberosum 
2010-01-01 | E-TABM-787 | biostudies-arrayexpress
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