Hela-s3 - OmicsDI

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7890A GC (Agilent, Santa Clara, CA, USA) instrument coupled to a 5975C MSD single quadrupole mass spectrometer (Agilent).Dionex Ultimate 3000 (Thermo Scientific) coupled to TSQ Quantum Ultra mass spectrometer (Thermo Scientific) (1)
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A5A3E0 (10)
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O15027 (10)
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O15144 (10)
O15372 (10)
O15523 (10)
O43592 (10)

ENSEMBL ID

ENSG00000170477 (9)
ENSG00000247315 (5)
ENSG00000147251 (2)

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2014 (21)
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2015 (7)
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Modification

-17.026549 (2)
-18.010565 (2)
15.994915 (2)
57.021464 (2)
79.966331 (2)
0.984016 (1)
10.008269 (1)
42.010565 (1)
8.014199 (1)

Study type

Transcription profiling by array (33)
ChIP-seq (32)
RNA-seq of coding RNA (19)
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Lab affiliation

Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (6)
Proteomics of Stem Cells and Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany (5)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (2)
Department of Pathology, Boston Children's Hospital, USA Department of Pathology, Harvard Medical School, USA (2)
1 German Cancer Research Center (DKFZ), Heidelberg, Germany 2 Heidelberg University, Medical Faculty, Heidelberg, Germany (lab head) (1)
1. Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel 2. Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel (1)
1Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, TaiKang Center for Life and Medical Sciences, Frontier Science Center for Immunology and Metabolism, Emergency Center, Zhongnan Hospital of Wuhan University, RNA Institute, Wuhan University, (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Cellular Dynamics Laboratory, RIKEN Cluster for Pioneering Research (CPR),Saitama 3510198, Japan. Present address:Jikei University of Health Care Sciences, Graduate School of Medical Safety Management, Osaka, Japan. (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee (1)
Centre for Gene Regulation and Expression School of Life Sciences, University of Dundee, Dundee (1)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (1)
Chair of Proteomics and Bioanalytics Technische Universitaet Muenchen (1)
Childrenâ??s Hospital Boston (1)
Department Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Department Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany; Protein Research, NNF Center for Protein Research, Copenhagen, Denmark (1)
Department of Biochemistry, Ghent University, Ghent, Belgium. Department of Medical Protein Research, VIB, Ghent, Belgium. (1)
Department of Biological Sciences, Tomida Lab, University of North Carolina at Charlotte, USA (1)
Department of Molecular Biology and Genetics Koç University Istanbul, Turkey (1)
Department of Molecular Biology and Genetics, Koc University, Istanbul, Turkey School of Medicine, Koc University, 34450 Istanbul, Turkey Koc University Research Center for Translational Medicine (KUTTAM), 34450 Istanbul, Turkey (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry (1)
Department of human molecular genetics and biochemistry, Sackler faculty of medicine, Tel Aviv University, Israel. (1)
Depratment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (1)
Dept. of Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Derpatment of Medical Biochemistry, Uppsala University, Uppsala, Sweden. (1)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (1)
Executive Director, Professor University of Copenhagen Faculty of Health and Medical Sciences Novo Nordisk Foundation Center for Protein Research Proteomics Program (1)

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STAT1 transcription factor in Human HeLa S3

We report the results of chromatin immunoprecipitation following by high-thoughput tag sequencing (ChIP-Seq) using the GA II platform from Illumina for the human transcription factor STAT1 in HeLa S3 cells. The STAT1 ChIP was performed using HeLa S3 cells that are stimulated using gamma-interferon. ...

ORGANISM(S): Homo sapiens

2008-09-15 | E-GEOD-12782 | biostudies-arrayexpress

Knockdown effect of CDK8 or CDK19 in HeLa S3 cell

Mediator complex has been known as pivotal regulator of RNA polymerase II. Mediator complex has two CDK subunits in vertebrates, named CDK8 and CDK19. To elucidate functional difference between CDK8 and CDK19 in human cell, we employ siRNA mediate knockdown assay using HeLa S3 cell line. According ...

ORGANISM(S): Homo sapiens

2011-09-14 | E-GEOD-32108 | biostudies-arrayexpress

Knockdown effect of CDK8 and CDK19 in HeLa S3 cell

ORGANISM(S): Homo sapiens

2013-03-16 | E-GEOD-45210 | biostudies-arrayexpress

Homo sapiens strain:Hela S3

Homo sapiens strain:Hela S3 Genome sequencing and assembly

PRJNA528572 | ENA

RNA-seq analysis of TALEN-mediated LATS2 knockout HeLa-S3 cells

Chromatin modifying activities for construction of appropriate epigenetic landscapes by polycomb repressive complex 2 (PRC2) play an essential role in development and tumorigenesis. However, the spatiotemporal mechanisms by which PRC2 achieves diverse epigenomes for specific tissue or cellular conte...

ORGANISM(S): Homo sapiens

2016-07-26 | E-GEOD-63537 | biostudies-arrayexpress

H3K4me1 ChIP-seq of untreated HeLa S3 cells

We used ATLAS-seq to map the sites of integration of an engineered LINE-1 (L1) retrotransposon into the genome of HeLa S3 cells. Then, we compared the position of these sites with publicly available genomic datasets. In order to cross-corroborate our findings with datasets obtained in the same cell ...

ORGANISM(S): Homo sapiens

2019-04-04 | E-MTAB-7643 | biostudies-arrayexpress

RNA-seq analysis of add-back rescued TALEN-mediated LATS2 knockout HeLa-S3 cells

ORGANISM(S): Homo sapiens

2016-07-26 | E-GEOD-66388 | biostudies-arrayexpress

Correlation between DNase I hypersensitive site distribution and gene expression in HeLa S3 cells [Illumina arrays]

We explored the relationship between the distribution of DNase I hypersensitive site(DHSs) and levels of gene expression. Expression values from 5 to 11 are raw log2 ratio-transformed data from gene expression arrays. We found that the distribution of DHSs in promoter region and CpG islands is posit...

ORGANISM(S): Homo sapiens

2015-06-19 | E-GEOD-38913 | biostudies-arrayexpress

Homo sapiens strain:HeLa-S3

LATS2 knockout causes PRC2 dysregulation and global H3K27me3 loss in HeLa-S3

PRJDB3275 | ENA

Genome-wide maps of chromatin state in LATS2-knockout HeLa-S3 cell

ORGANISM(S): Homo sapiens

2016-07-26 | E-GEOD-64072 | biostudies-arrayexpress

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