Herrero C C - OmicsDI

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Unknown (1064)
Transcriptomics (42)
Proteomics (34)
Genomics (8)
Methylation profiling (1)
Metabolomics (1)

Organisms

Homo sapiens (27)
Mus musculus (27)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (4)
Mesocricetus auratus (2)
Rattus norvegicus (2)
Spodoptera exigua (1)
Anabaena (1)
Citrus medica (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Caenorhabditis elegans (1)
Candida albicans (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Coprococcus sp. ART55/1 (1)
Lobelia burttii subsp. burttii (1)
Morus alba (1)
Rhizobium tropici CIAT 899 (1)
Sinorhizobium fredii HH103 (1)

Organisms

Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (46)
pride (33)
EGA (3)
ENA (2)
geo (1)
MetaboLights (1)

Tissue

Cell culture (5)
Skeletal muscle (5)
Skin (4)
Epithelial cell (3)
Skeletal muscle myoblast (2)
Aorta (1)
Aortic root (1)
B cell (1)
Blood (1)
Blood serum (1)
Brain (1)
Cell suspension culture (1)
Colon (1)
Dendritic cell (1)
Dentate gyrus (1)
Electrically active cell (1)
Endometrial gland (1)
Epididymal white adipose tissue (1)
Extracellular exosome assembly (1)
Extracellular vesicle (1)
HeLa cell (1)
Heart (1)
Macrophage (1)
Malignant cell (1)
Milk (1)
Plant cell (1)
Plasma cell (1)
Soleus (1)
Stem cell (1)
White adipose tissue (1)

Disease

Tubular aggregate myopathy 1 (2)
Tubular aggregate myopathy 2 (2)
Critical chronic obstructive pulmonary disease (1)
Ewing's sarcoma (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Chronic lymphocytic leukemia (1)
Colon cancer (1)
Epilepsy (1)
Female infertility (1)
Marfan syndrome (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Paroxysmal nocturnal hemoglobinuria (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Gel-based experiment (3)
Data-dependent acquisition (2)
SWATH MS (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
Mass spectrometry (1)
Top-down proteomics (1)

Instrument Platform

Affymetrix Genechip scanner 3000 (1)
Affymetrix Genechip hybridisation oven 650 (1)
Genepix 4100A (1)
Illumina Genome Analyzer (1)
Ion Torrent Proton (1)
NextSeq 500 (1)
Gas Chromatography MS - positive (1)

Publication Date

2022 (10)
2012 (9)
2013 (8)
2015 (7)
2025 (6)
2016 (5)
2019 (4)
2014 (4)
2011 (4)
2008 (4)
2020 (4)
2018 (3)
2009 (3)
2023 (3)
2021 (3)
2026 (2)
2017 (1)
2024 (1)

CHEBI ID

CHEBI:1148 (1)
CHEBI:15356 (1)
CHEBI:15428 (1)
CHEBI:15429 (1)
CHEBI:15978 (1)
CHEBI:16199 (1)
CHEBI:16449 (1)
CHEBI:16811 (1)
CHEBI:16958 (1)
CHEBI:17268 (1)
CHEBI:17368 (1)
CHEBI:17822 (1)
CHEBI:18012 (1)
CHEBI:18183 (1)
CHEBI:18186 (1)
CHEBI:18257 (1)
CHEBI:20067 (1)
CHEBI:22653 (1)
CHEBI:22660 (1)
CHEBI:24786 (1)
CHEBI:24813 (1)
CHEBI:24898 (1)
CHEBI:25017 (1)
CHEBI:25094 (1)
CHEBI:26078 (1)
CHEBI:26271 (1)
CHEBI:26986 (1)
CHEBI:27226 (1)
CHEBI:27266 (1)
CHEBI:28044 (1)

Metabolite Name

2-aminobutanoic acid (1)
2-hydroxybutanoic acid (1)
2-oxo-isocaproic acid (1)
3-Methyl-2-oxopentanoic-acid (1)
3-hydroxybutanoic acid (1)
Alanine (1)
Asparagine (1)
Aspartic acid (1)
Citric acid (1)
Cysteine (1)
DL-glutamine (1)
Decanoic acid (1)
Dodecanoic acid (1)
Fumaric acid (1)
Glutamine (1)
Glyceric acid (1)
Glycerol-3-phosphate (1)
Glycine (1)
Hexanoic acid (1)
Hydroxylamine (1)
Hypoxanthine (1)
Iminodiacetic acid (1)
Indole-3-lactic acid (1)
Isoleucine (1)
Lactic acid (1)
Leucine (1)
Lysine (1)
Methionine (1)
Nonanoic acid (1)
Ornithine (1)

First Public Date

2015 (1)
2013 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (3)
ChIP-seq (2)
ChIP-chip by tiling array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (144)
2022 (133)
2021 (121)
2025 (117)
2024 (81)
2020 (77)
2019 (60)
2018 (55)
2015 (52)
2016 (42)
2017 (38)
2014 (37)
2013 (33)
2012 (32)
2011 (27)
2026 (15)
2009 (13)
2008 (10)
2010 (10)
2006 (4)
2007 (2)
2005 (2)
2004 (2)
2002 (1)
2001 (1)
1998 (1)

Lab affiliation

University of Edinburgh (4)
PI in de Department of Molecular Biology in Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO)- Universidad Autónoma de Madrid (UAM), leading the project "Role of mitochondrial bioenergetics in skeletal muscle secretrome during exercise and pathology". (2)
1- Departamento de Biología Molecular, Centro de Biología Molecular "Severo Ochoa" (CBMSO), c/Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2- Instituto Universitario de Biología Molecular, IUBM, Universidad Autónoma de Madrid, Madrid, Spain. 3- Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 4- Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (lab head) (1)
1Cancer Research Program, Hospital del Mar Research Institute, Doctor Aiguader 88, Barcelona 08003, Spain. Centro de Investigación Biomédica en Red Cáncer (CIBERONC), Madrid, Spain. (1)
4Cellular Proteome Research, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Cardiovascular Proteomics Laboratory Centro Nacional de Investigaciones Cardiovasculares (CNIC) Madrid, Spain (1)
Cell Biology Division, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, UK (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Department of Biochemistry and Molecular Biology and Agricultural Chemistry and Soil science University of Alicante SPAIN (1)
Department of Cellular Biology and Pathology, Instituto de Neurociencias de Castilla y León (INCyL), Laboratory Nº12 (1)
Department of Obstetrics and Gynecology, School of Medicine, Stanford University, CA, USA. Igenomix Foundation, Instituto de Investigación Sanitaria Hospital Clínico (INCLIVA), Valencia, Spain (1)
Eurecat, Centre Tecnològic de Catalunya. Centre for Omic Sciences (COS), Joint Unit Universitat Rovira i Virgili-EURECAT. Reus, Spain (1)
Grupo de Proteómica-PBR2-ProteoRed/ISCIII-Grupo de Investigación de Reumatología (GIR), Instituto de Investigación Biomédica de A Coruña (INIBIC), Complexo Hospitalario Universitario de A Coruña (CHUAC), Sergas. Universidade da Coruña, A Coruña, Spain. (1)
Haematology and Oncology Department. University of Murcia Centro Regional de Hemodonación Ronda Garay s/n 30003 Murcia, Spain (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Laboratory 11 and Proteomics Unit. Cancer Research Center. Salamanca. Spain (1)
Laboratory of Molecular Biology (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH United Kingdom (1)
PI in de Departement of Molecular Biology in Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO)- Universidad Autónoma de Madrid (UAM), leading the project "Role of mitochondrial bioenergetics in skeletal muscle secretrome during exercise and pathology". (1)
Principal Investigator at Departamento de Biología Molecular, Centro de Biología Molecular Severo Ochoa (CBMSO, UAM-CSIC), Universidad Autónoma de Madrid (UAM), Madrid, Spain. University professor at Universidad Autónoma de Madrid (UAM), Madrid, Spain. (1)
Proteomic Research Translational Technology Platform, University College London Cancer Institute London UK (1)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (1)
Rowett Institute Gut Health Theme University of Aberdeen Foresterhill Aberdeen AB25 2ZD (1)
Structural Motility, UMR 144 CNRS/Curie Institute, PSL Research University, 26 rue d’Ulm, 75258 Paris cedex 05, France (1)
Systems Biology Ireland, University College Dublin (1)
systems biology Ireland, UCD (1)

Tags

xref:PubMed:18612301 (1)
xref:PubMed:26469318 (1)

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The Chemistry of Cosmic Dust Analogues from C, C₂, and C₂H₂ in C-Rich Circumstellar Envelopes.

Not available

S-EPMC7116318 | biostudies-literature

Photoinduced Reductive C-C and C-Heteroatom Couplings from Bis-cyclometalated Pt(IV) Alkynyl Complexes.

Not available

S-EPMC10481375 | biostudies-literature

Luminescent Platinum(II) Complexes with Terdentate N∧C∧C Ligands.

Not available

S-EPMC10751801 | biostudies-literature

ChIP analysis unravels an exceptionally wide distribution of binding sites for the NtcA transcription factor in a heterocyst-forming cyanobacterium.

The CRP-family transcription factor NtcA, universally found in cyanobacteria, was initially discovered as a regulator operating N control. It responds to the N regime signaled by the internal 2-oxoglutarate levels, an indicator of the C to N balance of the cells. NtcA-activated canonical promoters b...

ORGANISM(S): Anabaena

2014-01-28 | E-GEOD-51865 | biostudies-arrayexpress

Intramolecular Photogeneration of a Tyrosine Radical in a Designed Protein.

Not available

S-EPMC5642932 | biostudies-literature

Study of RFX1 and RFX3 binding sites in the mouse genome

The aim of the study was to identify RFX1 and RFX2 binding sites in mouse pancreatic beta cells. Chromatin immunoprecipitation experiments were performed with the mouse MIN6 beta cell line and antibodies raised against RFX1 and RFX3. Immunoprecipitated DNA was sequenced using the Genome Analyzer II ...

ORGANISM(S): Mus musculus

2015-08-22 | E-GEOD-72272 | biostudies-arrayexpress

The millimeter-wave spectrum and astronomical search of succinonitrile and its vibrational excited states ★.

Not available

S-EPMC6726483 | biostudies-literature

Connexin43 recruits PTEN and Csk to inhibit c-Src activity in glioma cells and astrocytes.

Not available

S-EPMC5226550 | biostudies-literature

An integrated global analysis of compartmentalized HRAS signaling

Modern omics technologies allow us obtaining global information on different types of biological networks. However, integrating these different types of analyzes into a coherent framework for a comprehensive biological interpretation remains challenging. Here, we present a conceptual framework that ...

ORGANISM(S): Homo sapiens

2019-03-12 | E-MTAB-7672 | biostudies-arrayexpress

Nanomechanical Phenotypes in Cardiac Myosin-Binding Protein C Mutants That Cause Hypertrophic Cardiomyopathy.

Not available

S-EPMC8514129 | biostudies-literature

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