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TranscriptomicsThe molecular response of Clostridium thermocellum ATCC 27405 to ethanol shock
Clostridium thermocellum is a Gram-positive, anaerobic, thermophilic bacterium that ferments cellulose into ethanol. It is a candidate industrial consolidated bioprocess (CBP) biocatalyst for lignocellulosic bioethanol production. However, C. thermocellum is relatively sensitive to ethanol compared ...
ORGANISM(S): Clostridium thermocellum ATCC 27405 
2012-08-16 | E-GEOD-25236 | biostudies-arrayexpress
ProteomicsDiversity and specificity of extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic substrate
Diversity and specificity of extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic substrate
ORGANISM(S): Caldicellulosiruptor Bescii (ncbitaxon:31899) 
2017-12-22 | MSV000081856 | MassIVE
MetabolomicsGNPS - Integrated omics analysis reveals metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass
Integrated omics analysis reveals metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass
ORGANISM(S): Hungateiclostridium Thermocellum (ncbitaxon:1515) 
MSV000080128 | GNPS
MetabolomicsTowards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase
Soil-borne microbes can establish compatible relationships with host plants, providing a large variety of nutritive and protective compounds in exchange for photosynthesized sugars. However, the molecular mechanisms mediating the establishment of these beneficial relationships remain unclear. Our pr...
2021-08-11 | MTBLS2597 | MetaboLights
ProteomicsGenome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals core metabolic functions and variability during early-life
An integrated metagenomics and metaproteomics investigation of human preterm infant gut microbiota.
ORGANISM(S): Gut Microbiota Of Human Preterm Infants 
2017-02-23 | MSV000080565 | MassIVE
ProteomicsMetaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes despite temporal variations in microbial taxa, genomes, and proteomes
Longitudinal metaproteomics data set looking at the gut microbiome metaproteomes of fivepost-surgery Crohn's Disease patients for five time points over the course of a year.
ORGANISM(S): Human Microbiome 
2018-08-16 | MSV000082823 | MassIVE
ProteomicsMicrobiota functional activity biosensors
Microbiota functional activity biosensors in gnotobiotic mice
ORGANISM(S): Microbiota Mus Musculus 
2020-04-27 | MSV000085341 | MassIVE
ProteomicsMetaproteome of preterm infant gut microbiome
91 preterm infant gut metaproteomes measured in technical duplicate using an eleven salt pulse 2D-LC-MS/MS method. Samples represent 17 preterm infants over the first several weeks of life, of which 6 preterm infants eventually developed necrotizing enterocolitis.
ORGANISM(S): Microbiome 
MSV000086096 | MassIVE
ProteomicsBioremediation of a common product of food processing by a human gut bacterium
Bioremediation of a common product of food processing by a human gut bacterium
ORGANISM(S): Mus Musculus (ncbitaxon:10090) Microbiome 
2019-08-27 | MSV000084239 | MassIVE
TranscriptomicsCharacterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris
To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris...
ORGANISM(S): Rhodopseudomonas palustris 
2008-05-07 | E-GEOD-6221 | biostudies-arrayexpress
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