Hfx - OmicsDI

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Proteomics (321)
Unknown (71)
Metabolomics (32)
Genomics (10)
Transcriptomics (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (295)
Allexis (295)
Canis lupus familiaris (295)
Carya cathayensis (295)
Clostridioides difficile 630 (295)
Cyanophora paradoxa (295)
Ensifer adhaerens (295)
Enterococcus faecalis (295)
Globicatella sanguinis (295)
Histomonas meleagridis (295)
Human immunodeficiency virus 1 (295)
Listeria monocytogenes (295)
Marchantia polymorpha (295)
Methylohalobius crimeensis 10Ki (295)
Mus musculus (295)
Mycobacterium tuberculosis (295)
Ophrys garganica (295)
Ophrys sphegodes (295)
Physcomitrium patens (295)
Pseudomonas aeruginosa SJTD-1 (295)
Pseudomonas putida KT2440 (295)
Rattus norvegicus (295)
Rhizobium sp. Leaf68 (295)
Schizosaccharomyces pombe 927 (295)
Schizosaccharomyces pombe 972h- (295)
Shigella (295)
Haloferax mediterranei (2)
Haloferax volcanii DS2 (2)
Mus musculus (2)
Homo sapiens (2)

Organisms

Nematoda sp. HFX-2016 (2)
Haloferax volcanii DS2 (2)
Haloferax gibbonsii (1)
Haloferax mediterranei (1)

Repository

pride (295)
MetaboLights (32)
MassIVE (23)
ENA (8)
geo (3)
iProX (3)
biostudies-arrayexpress (1)

Tissue

Cell culture (52)
Epithelial cell (24)
Brain (12)
Cell line cell (11)
Liver (11)
T cell (10)
Colon (8)
Heart (8)
Permanent cell line cell (8)
Cell suspension culture (7)
Kidney (7)
Lung (7)
Spleen (7)
UWB1.289 cell (6)
Blood plasma (5)
Embryonic stem cell (5)
Hepatocyte (5)
Lymph node (5)
B cell (4)
Pancreas (4)
Skeletal muscle (4)
Skin (4)
Stem cell (4)
Blood serum (3)
Cerebrospinal fluid (3)
HEK-293 cell (3)
Macrophage (3)
Melanocyte (3)
Oocyte (3)
T-47D cell (3)

Disease

Breast cancer (6)
Colon cancer (4)
Acute leukemia (3)
COVID-19 (3)
Cervix carcinoma (3)
Malignant neoplasm of ovary (3)
Osteoarthritis (3)
Crohn's disease (2)
Diabetes mellitus (2)
Glioblastoma (2)
Idiopathic pulmonary fibrosis (2)
Inflammatory bowel disease (2)
Pancreatic cancer (2)
Skin melanoma (2)
Squamous cell carcinoma (2)
Toxoplasmosis (2)
Type 2 diabetes mellitus (2)
Ulcerative colitis (2)
Alcohol-associated liver disease (1)
Autism spectrum disorder (1)
Barrett's esophagus (1)
Basal cell carcinoma (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cachexia (1)
Cardiovascular system disease (1)
Colorectal cancer (1)
Parkinson's disease (1)
Parkinsonism (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (295)
Shotgun proteomics (141)
Bottom-up proteomics (65)
Affinity purification coupled with mass spectrometry proteomics (46)
Data-dependent acquisition (45)
Gel-based experiment (20)
Mass spectrometry (18)
SWATH MS (15)
Mass spectrometry assay (14)
Data-independent acquisition (13)
SRM/MRM (7)
Top-down proteomics (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Immunopeptidomics (3)
MSE (2)
All-ion fragmentation (1)
HDMSE (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (11)
Liquid Chromatography MS - positive - hilic (11)
Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (7)
Q-Exactive HFX (5)
Liquid Chromatography MS - alternating - reverse-phase (4)
Orbitrap Fusion Lumos (3)
Orbitrap HFX (3)
QExactive HFX (3)
Liquid Chromatography MS - alternating - hilic (3)
Liquid Chromatography MS - negative - HILIC (3)
Liquid Chromatography MS - positive - HILIC (3)
Q Exactive (2)
Q Exactive HF (2)
Q Exactive HF-X (2)
Q Exactive HFX (2)
QE-HFX (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
HFX Orbitrap (1)
Q Exactive HFX (Thermo Scientific Instrument Model) (1)
Synapt MS (1)
Thermo Q Exactive HFX (1)
TimsTOF Pro (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - negative - reversed-phase-c18 (1)
Liquid Chromatography MS - positive - reversed-phase-c18 (1)
Gas Chromatography MS - (1)

Publication Date

2024 (71)
2025 (67)
2022 (55)
2023 (41)
2021 (41)
2026 (38)
2020 (24)
2019 (10)
2018 (6)
2016 (1)
2027 (1)

CHEBI ID

CHEBI:16704 (7)
CHEBI:17368 (7)
CHEBI:75108 (6)
CHEBI:85661 (6)
CHEBI:16811 (6)
CHEBI:16708 (6)
CHEBI:17748 (6)
CHEBI:36592 (6)
CHEBI:116314 (6)
CHEBI:55328 (6)
CHEBI:16359 (6)
CHEBI:17533 (6)
CHEBI:18237 (6)
CHEBI:73722 (6)
CHEBI:18323 (6)
CHEBI:17509 (6)
CHEBI:17015 (6)
CHEBI:32816 (6)
CHEBI:18300 (6)
CHEBI:16750 (6)
CHEBI:16235 (6)
CHEBI:17154 (6)
CHEBI:16737 (6)
CHEBI:17351 (6)
CHEBI:17656 (5)
CHEBI:171952 (5)
CHEBI:172309 (5)
CHEBI:58047 (5)
CHEBI:17364 (5)
CHEBI:39992 (5)

Metabolite Name

LysoPE(18:1(9Z)/0:0) (7)
Citrulline (7)
Taurine (7)
Urocanic acid (7)
Guanine (7)
Deoxyguanosine (7)
Guanosine (7)
Deoxycytidine (7)
Creatinine (7)
Hypoxanthine (7)
1H-Indole-2,3-dione (6)
Pyrrolidonecarboxylic acid (6)
Linoleamide (6)
2-Hydroxy-3-methylbutyric acid (6)
Uracil (6)
5'-Methylthioadenosine (6)
D-Alanine (6)
9,10-DHOME (6)
L-Threonine (6)
4-Hydroxybenzaldehyde (6)
Deoxycholic acid (6)
N-Acetyl-L-aspartic acid (6)
L-Glutamic acid (6)
Riboflavin (6)
Hexadecanedioic acid (6)
Azelaic acid (6)
Adenine (6)
Thymidine (6)
Uridine (6)
Inosine (6)

First Public Date

2023 (3)
2016 (2)
2024 (1)
2018 (1)
2015 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (1)

Release Date

2021 (14)
2014 (9)
2024 (8)
2020 (7)
2022 (5)
2023 (4)
2015 (4)
2016 (3)
2025 (3)
2010 (3)
2026 (2)
2019 (2)
2013 (2)
2008 (2)
2018 (1)
2017 (1)
2012 (1)
2011 (1)

Lab affiliation

Cellzome (10)
Wageningen University (9)
Keck MS & Proteomics Resource Yale School of Medicine (5)
University of Sydney (4)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (3)
Medical Oncology and Pulmonology, University Hospital Tübingen, Germany (3)
Novo Nordisk Center For Basic Metabolic Research, University of Copenhagen. (3)
University of Oxford (3)
University of Pennsylvania, Department of Biology (3)
Department of Biology University of Fribourg Switzerland (2)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 76100, Israel (2)
Department of Systems Immunology, Weizmann Institute of Science, Rehovot, Israel (2)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (2)
Dept. of Biological Chemistry The Institute of Life Science The Hebrew University of Jerusalem Jerusalem 91904, Israel (2)
Division of Surgery, Oncology, and Pathology, Department of Clinical Sciences. Biomedical Center – Lund University, Solvegatan 19, 223 62, Lund, Sweden (2)
Dr. Elke Hammer Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (2)
IBMM, Univ Montpellier, CNRS, ENSCM, 34095 Montpellier, France (2)
Institute of Biology, Biosystem's adaptation laboratory,Irkutsk State University,Russia (2)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (2)
Johns Hopkins University, Chemistry Department, Fried Lab, USA (2)
Key Laboratory of Brain Functional Genomics of Shanghai and Ministry of Education, Institute of Brain Functional Genomics, School of Life Science and the Collaborative Innovation Center for Brain Science, East China Normal University, Shanghai, China (2)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association (2)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health & Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen, Denmark (2)
School of Life and Environmental Sciences, University of Sydney, NSW 2006 Australia (2)
Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China. (2)
The University of Sydney (2)
UMR 5235 CNRS, Université de Montpellier, 34095 Montpellier, France (2)
Universite de Montpellier LPHI UMR5235, France (2)
University of Pittsburgh (2)

Tags

xref:PubMed:410658 (2)
xref:PubMed:38204420 (2)
xref:PubMed:29439418 (1)

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Nematoda sp. HFX-2016

Nematoda sp. HFX-2016 Raw sequence reads

PRJNA320672 | ENA

Nematoda sp. HFX-2016

Nematoda sp. HFX-2016 Raw sequence reads

PRJNA320796 | ENA

rosR knockout mutants in Hfx. volcanii and mediterranei

PRJNA1173512 | ENA

Untargeted LC-MS metabolomic profiling of Tulipa iliensis leaves during Botrytis tulipae infection

This study investigated the metabolic responses of Tulipa iliensis leaves to Botrytis tulipae infection using untargeted LC-MS metabolomics. Leaf tissues were collected at 0, 6, 12, 24, 48 and 72 h post-inoculation, with three biological replicates per time point. All samples were snap-frozen in liq...

2027-08-19 | MTBLS15393 | MetaboLights

A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics

A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics using SCIEX TripleTOF5600 and 6600+, Orbitrap QE-HFX, Waters Synapt GS-Si and Synapt XS and Bruker timsTOF Pro.

ORGANISM(S): Candida albicans (Yeast) Homo sapiens (Human) Escherichia coli

2022-02-14 | PXD028735 | Pride