Hhv - OmicsDI

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Transcriptomics (940)
Unknown (589)
Genomics (161)
Proteomics (79)
Metabolomics (5)
Other (4)
Multiomics (2)
Genomic (1)
Methylation profiling (1)

Organisms

Homo sapiens (666)
Mus musculus (194)
Streptococcus pneumoniae D39 (16)
Saccharomyces cerevisiae (15)
Arabidopsis thaliana (14)
Rattus norvegicus (12)
Drosophila melanogaster (8)
Bos taurus (7)
Danio rerio (6)
Macaca mulatta (5)
Sus scrofa (5)
Gallus gallus (4)
Schizosaccharomyces pombe (3)
Oryza sativa (3)
Chlorocebus sabaeus (2)
Zea mays (2)
Anopheles gambiae (2)
Glycine max (2)
Ovis aries (2)
Canis lupus familiaris (2)
Escherichia coli (2)
Agrobacterium tumefaciens (1)
activated sludge metagenome (1)
Streptococcus dysgalactiae subsp. equisimilis (1)
Saccharum sp. (1)
Amycolatopsis mediterranei S699 (1)
Gracilaria tenuistipitata (1)
Cercocebus atys (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Phaseolus vulgaris (1)

Organisms

Homo sapiens (37)
Human betaherpesvirus 6B (2)
Human gammaherpesvirus 8 (2)
Herpesviridae sp. (1)
Human betaherpesvirus 6A (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (951)
ENA (70)
EGA (48)
geo (35)
pride (30)
MassIVE (26)
jPOST (12)
PanoramaPublic (7)
MetaboLights (5)
EVA (3)
iProX (3)
dbGaP (1)

Tissue

Cell culture (14)
Fibroblast (12)
Foreskin fibroblast cell line (3)
Brain (2)
Foreskin fibroblast (2)
Cell suspension culture (1)
Epithelial cell (1)
Kidney (1)
Liver (1)
Lung fibroblast cell line (1)
Macrophage (1)

Disease

Human cytomegalovirus infection (3)
HHV-6B infected (2)
Disease free (2)
Glioblastoma (2)
Herpes simplex (2)
Cytomegalovirus seropositive (1)
HPV positive (1)
High grade glioblastoma (1)
Primary effusion lymphoma (PEL) (1)
Acute lymphocytic leukemia (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Alzheimer's disease (1)
Schizophrenia (1)
Xenografts with H1299 cell line (1)
Kaposi's sarcoma (1)
AIDS-KS, HIV+, nodular (late) stage (1)
Leukemia (1)
Nodal peripheral T-cell Lymphoma (1)
Breast cancer (1)
Brain cancer (1)
Cytomegalovirus retinitis (1)
Hepatitis (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (6)
Mass spectrometry (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
Illumina HiSeq 2000 (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
HiSeq X Ten (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Mass spectrometry assay (1)
HDMSE (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (10)
Illumina HiSeq 1500 (9)
NextSeq 500 (7)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 4000 (5)
Q Exactive (5)
LTQ (3)
Orbitrap Fusion (3)
Orbitrap Fusion Lumos (3)
Illumina NovaSeq X (2)
LTQ Orbitrap (2)
LTQ Orbitrap Elite (2)
LTQ Orbitrap XL (2)
Q Exactive HF (2)
SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
10X Genomics Single Cell, V3.1 (1)
BD FACSAria III (1)
None (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
MassARRAY iPLEX (1)
6550 iFunnel Q-TOF LC/MS (1)
6560 Q-TOF LC/MS (1)
LTQ Orbitrap Velos (1)
LTQ XL ETD (1)
NanoACQUITY UPLC (1)
Q Exactive Plus (1)

Publication Date

2015 (150)
2013 (134)
2010 (123)
2014 (112)
2012 (109)
2011 (104)
2008 (52)
2016 (50)
2009 (41)
2007 (24)
2022 (22)
2020 (20)
2021 (19)
2025 (17)
2019 (16)
2005 (14)
2026 (13)
2024 (13)
2023 (12)
2018 (8)
2006 (4)
2017 (3)
2004 (3)
2003 (1)

CHEBI ID

CHEBI:46171 (1)
CHEBI:21363 (1)
CHEBI:35766 (1)
CHEBI:84814 (1)
CHEBI:183109 (1)
CHEBI:165872 (1)
CHEBI:60312 (1)
CHEBI:36315 (1)
CHEBI:78266 (1)
CHEBI:84153 (1)
CHEBI:73218 (1)
CHEBI:78261 (1)
CHEBI:73209 (1)
CHEBI:75062 (1)
CHEBI:83053 (1)
CHEBI:15919 (1)
CHEBI:84829 (1)
CHEBI:33511 (1)
CHEBI:45696 (1)
CHEBI:133469 (1)
CHEBI:78647 (1)
CHEBI:44673 (1)
CHEBI:84415 (1)
CHEBI:45441 (1)
CHEBI:17768 (1)
CHEBI:138368 (1)
CHEBI:91315 (1)
CHEBI:82968 (1)
CHEBI:741548 (1)
CHEBI:22470 (1)

Metabolite Name

LPE O-18:1 (2)
Isoleucine (2)
Ï«-Cyclodextrin (1)
PC O-18:1_16:0 (1)
LNAPE 22:4/N-18:0 (1)
LNAPE 16:0/N-20:0 (1)
PE O-18:0_22:4 (1)
PE O-17:1_22:6 (1)
PC O-18:0_22:6 (1)
19(R)-Hydroxy prostaglandin F2Ï« (1)
6Ï«-Prostaglandin I1 (1)
Ï«-D-Glucose-1,6-bisphosphate (1)
N1-[3-(acetylamino)-2-oxo-2H-chromen-6-yl]-4-nitrobenzamide (1)
(©I)5(6)-DiHET (1)
2-Hydroxybenzaldehyde N-(4,6-dichloro-1,3-benzothiazol-2-yl)hydrazone (1)
15(R),19(R)-Hydroxy prostaglandin F1Ï« (1)
15(R),19(R)-Hydroxy prostaglandin F2Ï« (1)
Prostaglandin F3Ï« (1)
Quercetin-3ÉÇ-D-glucoside (1)
17Ï«-Hydroxyprogesterone (1)
ÉÇ-Estradiol (1)
2-[(4,6-dichloro-1,3-benzothiazol-2-yl)thio]aniline (1)
11ÉÇ-Prostaglandin E2 (1)
Ethyl-ÉÇ-D-glucuronide (1)
(©I)9-HpODE (1)
Ethyl 4-chloro-3-[(3,5-dichloro-2-hydroxybenzylidene)amino]benzoate (1)
Ï«-Aspartylphenylalanine (1)
Ñ´-Ribono-1,4-lactone (1)
PG 18:0_18:1 (1)
PG 18:1_18:1 (1)

First Public Date

2025 (10)
2014 (10)
2023 (7)
2018 (7)
2026 (6)
2022 (6)
2024 (5)
2019 (5)
2020 (4)
2021 (2)
2017 (2)
2016 (2)
2010 (2)
2015 (1)
2013 (1)

Classification

viruses (6)

Study type

Transcription profiling by array (649)
RNA-seq of coding RNA (86)
Unknown experiment type (31)
ChIP-seq (27)
Comparative genomic hybridization by array (26)
RNA-seq of non coding RNA (24)
Other (21)
Methylation profiling by array (13)
Cell line - High-throughput sequencing (11)
ChIP-chip by tiling array (10)
Transcription profiling by tiling array (9)
RNA-seq of total RNA (7)
Methylation profiling by high throughput sequencing (6)
Genotyping by array (4)
Transcription profiling by SAGE (3)
ChIP-chip by array (3)
Transcription profiling by RT-PCR (3)
Proteomic profiling by array (3)
Human - High-throughput sequencing (2)
MicroRNA profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by MPSS (1)
Differential (1)
Human - Single-cell sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Capture-C (1)
ATAC-seq (1)
Ribo-seq (1)
CUT&RUN (1)

Release Date

2015 (160)
2013 (148)
2014 (133)
2010 (129)
2012 (125)
2011 (110)
2022 (68)
2021 (65)
2016 (63)
2025 (61)
2023 (58)
2020 (57)
2008 (56)
2009 (53)
2024 (46)
2018 (38)
2019 (36)
2017 (32)
2007 (29)
2005 (13)
2026 (11)
2001 (10)
1999 (8)
2004 (7)
2000 (7)
2006 (5)
2002 (5)
1998 (5)
2003 (2)

Lab affiliation

Department of Molecular Biology, Princeton University (2)
1) Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom 2) Institute of Structural and Molecular Biology, Birkbeck College, University of London, London, United Kingdom (1)
1: Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, NSW, Australia 2: School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, NSW, Australia (1)
1VIB Center for Medical Biotechnology, VIB, Technologiepark-Zwijnaarde 75, 9052 Ghent, Belgium. 2Department of Biomolecular Medicine, Ghent University, Technologiepark-Zwijnaarde 75, 9052 Ghent, Belgium. (1)
Biotechnology and Bioengineering Center, Deptartment of Microbiology, Medical College of Wisconsin (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Department of Biochemistry and Biophysics Smilow Center for Translational Research Perelman School of Medicine University of Pennsylvania Room 9-124 (office) 3400 Civic Center Blvd Philadelphia, PA 19104 215-573-9423 (office) (1)
Department of Chemistry, Imperial College London (1)
Department of Internal Medicine I Division of Infectious Diseases, Medical University of Vienna, Austria (1)
Department of Molecular Biology, Princeton University, USA (1)
Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA USA Division of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA USA (1)
Department of Pathology, University of Cambridge (1)
EDyP (1)
Infection and Immunity Program Biomedicine Discovery Institute Monash University 23 Innovation Walk Clayton VIC 3800 Australia (1)
Institute for Research Biomedicine USI (1)
Institute for Virology and Immunobiology, Julius-Maximilians-University Würzburg, Versbacher Straße 7, 97078 Würzburg, Germany (1)
Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom (1)
Institute of Virology, Technical University of Munich, Munich 81675, Germany (1)
Leibniz-Institut für Molekulare Pharmakologie (FMP) (1)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (1)
MDC Berlin (1)
Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, NSW, Australia School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, NSW, Australia (1)
Molecular Biology Department, Princeton University, Princeton, NJ, USA (1)
Molecular Biology Department, Princeton University, Princeton, USA (1)
Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology (1)
Senior Researcher, Institute for Virology and Immunobiology, University of Würzburg, Versbacher Strasse 7, 97078 Würzburg, Germany (1)
iRTSV/BGE/EDyP INSERM - CEA - Grenoble-Alpes University (1)

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Small RNA deep-sequencing identifies microRNAs and other small non-coding RNAs from human herpesvirus 6 (HHV-6B)

Roseolovirus, or human herpesvirus 6 (HHV-6) is a ubiquitous human pathogen infecting over 95% of the population by the age of two years. As with other herpesviruses, reactivation of HHV-6 can present with severe complications in immunocompromised individuals. Recent studies have highlighted the imp...

ORGANISM(S): Human herpesvirus 6B

2012-01-01 | E-GEOD-34196 | biostudies-arrayexpress

Active HHV-6 Infection of Cerebellar Purkinje Cells in Mood Disorders.

Not available

S-EPMC6110891 | biostudies-literature

Expression changes in cultured endothelial cells upon infection with HHV-8

Tert-immortalized microvascular endothelial (TIME) cells are infected with human herpesvirus (HHV-8) or mocked infected to determine expression changes upon infection. Three samples to TIME cells are infected with HHV-8 and three samples are mock-infected.

ORGANISM(S): Homo sapiens

2011-07-31 | E-GEOD-27136 | biostudies-arrayexpress

DNA Sensors' Signaling in NK Cells During HHV-6A, HHV-6B and HHV-7 Infection.

Not available

S-EPMC7042408 | biostudies-literature

Transcription profiling of human umbilical vein endothelial cells after transfection with the anti-apoptotic protein vFLIP/K13 of human herpesvirus type-8 (HHV-8)

Modulation of the transcriptome of human umbilical vein endothelial cells (HUVEC) by the anti-apoptotic protein vFLIP/K13 of human herpesvirus type-8 (HHV-8)

ORGANISM(S): Homo sapiens

2008-11-14 | E-MEXP-1469 | biostudies-arrayexpress

Human Herpesvirus 6A encoded miRNAs: A role in viral lytic replication

We report the application of size selection of small RNA species isolated from Jjhan cells harboring the human herpesvirus 6A genome. We ammassed >3.4million reads of sequence from three different sources: Normal Brain cell total RNA, Jjhan total RNA and HHV-6A BAC transfected Jjhan total RNA. Sequ...

ORGANISM(S): Homo sapiens

2015-01-09 | E-GEOD-62233 | biostudies-arrayexpress

Copy Number Heterogeneity, Large Origin Tandem Repeats, and Interspecies Recombination in Human Herpesvirus 6A (HHV-6A) and HHV-6B Reference Strains.

Not available

S-EPMC5923074 | biostudies-literature

Transcription profiling of HHV-6B viral genes from infected human CD4+ cells in the presence of DNA synthesis inhibitor

Transcriptional profiling of viral genes in the presence of DNA synthesis inhibitor.

ORGANISM(S): Homo sapiens

2009-08-07 | E-MEXP-2130 | biostudies-arrayexpress

HHV-6A infection induces amyloid-beta expression and activation of microglial cells.

Not available

S-EPMC6909659 | biostudies-literature