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ProteomicsMSE quantified stroma proteome
Label-free protein quantification has developed into an attractive alternative to isotopic labeling for the quantification of proteins by mass spectrometry. Recently, the suite of label-free quantification strategies was expanded by LC-MSE–based absolute and relative protein quantification. We repor...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-04-14 | PXD000446 | Pride
Meta-analysis Cloroplast stroma Quantitative lc-hdmse Normalization Arabidopsis thaliana 
UnknownIntegration of Data-Dependent Acquisition (DDA) and Data-Independent High-Definition MSE (HDMSE) for the Comprehensive Profiling and Characterization of Multicomponents from Panax japonicus by UHPLC/IM-QTOF-MS.
Not available
S-EPMC6695638 | biostudies-literature
UnknownHigh definition transcranial direct current stimulation modulates abnormal neurophysiological activity in post-stroke aphasia.
Not available
S-EPMC7665190 | biostudies-literature
ProteomicsTranscriptomics – assisted proteome profiling of black pepper (Piper nigrum L.)
This study was designed to evaluate the proteome profiles of Piper nigrum when challenged with three different biotic stress. We have utilized a transcriptome-assisted protein identification pipeline coupled with a BLAST2GO annotation.
ORGANISM(S): Piper nigrum 
2022-03-02 | PXD004008 | Pride
Nanoacquity uplc Lc-mse Piper nigrum Proteinlynx global server 
UnknownGrey-box modeling and hypothesis testing of functional near-infrared spectroscopy-based cerebrovascular reactivity to anodal high-definition tDCS in healthy humans.
Not available
S-EPMC8494321 | biostudies-literature
ProteomicsPatients with early stage oropharyngeal squamous cell carcinoma can be identified with label-free serum proteomics
Increased incidence of oropharyngeal squamous cell carcinoma (OPSCC) is mainly related to Human Papilloma Virus (HPV) infection. As OPSCCs are often diagnosed at an advanced stage, mortality and morbidity remain high. There are no diagnostic biomarkers for early stage detection of OPSCC. Serum from...
ORGANISM(S): Homo sapiens (Human) 
2018-07-11 | PXD008445 | Pride
Oropharyngeal squamous cell carcinoma  serum proteomics  multivariate data analysis  complement factor h-related protein 2  myosin regulatory light chain 12a 
ProteomicsMultiomics approach to identify novel fecal biomarkers of Alzheimer’s disease in a mouse model.
Background: Currently, a specific diagnostic test for Alzheimer’s disease (AD) is not available. AD diagnosis is a long process that requires the execution of various clinical and instrumental tests. To date, the possibility of prevention, early diagnosis with prompt management of patients is almost...
ORGANISM(S): Mus musculus (Mouse) 
2026-09-07 | PXD070630 | Pride
Proteomics Alzheimer disease (ad) Biomarkers 
ProteomicsPhysiology of trans-translation deficiency in Bacillus subtilis – a comparative proteomics study
trans-Translation is the most effective ribosome rescue system known in bacteria. While it is essential in some bacteria, Bacillus subtilis possesses two additional alternative ribosome rescue mechanisms that require the proteins BrfA or RqcH. To investigate the physiology of trans-translation defic...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2023-06-30 | PXD037804 | Pride
Lc-mse Translation Gene regulation Bacteria Proteome 
ProteomicsCharacterization of human plasma depletome from patients with schizophrenia
The proteome of blood plasma is an interesting source of biomarkers and a potential way to improve treatment outcomes in psychiatric disorders. But its wide dynamic concentration range makes reducing its complexity necessary. Thus, in proteomic studies, a few of the most abundant proteins are deplet...
ORGANISM(S): Homo sapiens (Human) 
2019-10-23 | PXD010273 | Pride
Depletion Depletome High-definition mse Proteomics Plasma 
ProteomicsProteogenomics insights into the hemi-biotrophic pathogen, Phytophthora capsici
This study was designed to evaluate the proteome profiles of Phytophthora capsici. We have utilized a proteogenomics pipeline for identification of proteins from P. capsici.
ORGANISM(S): Phytophthora capsici LT1534 
2022-03-02 | PXD003952 | Pride
Nanoacquity uplc Lc-mse Piper nigrum Proteinlynx global server 
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