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GenomicsChromosome conformation capture by high thoughput sequencing (HiC) during Naïve CD4 T cell activation
Chromosome conformation capture by high thoughput sequencing (HiC) during Naïve CD4 T cell activation
PRJNA503263 | ENA
TranscriptomicsConservation genomics reveals pesticide and pathogen exposure in the declining bumblebee Bombus terricola
We use high-thoughput RNA sequencing to investigate the stressors experienced by the vulnerable Bombus terricola near agricultural areas.
ORGANISM(S): Bombus terricola 
2021-06-25 | GSE174536 | GEO
TranscriptomicsHigh-throughput lncRNA sequencing profile of ovarian granulosa cells in polycystic ovary syndrome
Purpose:To examine different expression profiles of lncRNAs and mRNAs in ovarian granulosa cells (GCs) in PCOS patients and controls Patients:6 GCs samples in each group were subjected to high-thoughput sequencing Results:54,615 lncRNAs and 123,141 mRNAs were detected in this high-thoughput sequenci...
ORGANISM(S): Homo sapiens 
2023-04-20 | GSE173160 | GEO
GenomicsGenome-wide localization of RNA polymerase II and histone modifications in diffuse intrinsic pontine glioma cells in response to CDK9 inhibition
We report the application of chromatin immunoprecipitation for high-thoughput profiling of RNA polymerase II and histone modifications (H3K27me3 and H3K27ac) in diffuse intrinsic pontine glioma cells (DIPG) in response to CDK9 inhibition
ORGANISM(S): Homo sapiens 
2020-04-12 | GSE129777 | GEO
TranscriptomicscircZFR promote lung carcinogenesis and oxidative phosphorylation by modulating alternative splicing
Our study suggested that circZFR was a potential oncogene in lung adenocarcinoma. To investigate the function of circZFR, we performed high-thoughput RNA sequencing (RNA-Seq) assays after the silence of circZFR in A549 cell lines.
ORGANISM(S): Homo sapiens 
2022-01-08 | GSE193064 | GEO
TranscriptomicsFAM83H-AS1 is a non-coding oncogenic driver and therapeutic target of lung adenocarcinoma
Our study suggested that FAM83H-AS1 was a potential oncogenic driver due to chromosome 8q24 amplification in lung adenocarcinoma. To investigate the molecular mechanism of FAM83H-AS1, we performed high-thoughput RNA sequencing (RNA-Seq) assays after the silence of FAM83H-AS1 in A549 cell lines.
ORGANISM(S): Homo sapiens 
2020-10-20 | GSE159559 | GEO
OtherChromosome conformation capture by high thoughput sequencing (HiC) during Naïve CD4 T cell activation
We report chromatin interaction changes before and early after naïve CD4 T cell activation.
ORGANISM(S): Homo sapiens 
2021-10-01 | GSE122051 | GEO
GenomicsSenescence induced by BMI1 inhibition is a therapeutic vulnerability in H3K27M-mutant DIPG
We studied the effect of BMI1 inhibition in diffuse intrinsic pontine glioma cells (DIPG). We reported the application of chromatin immunoprecipitation sequencing for high-thoughput profiling of BMI1 and H2AK119ub in diffuse intrinsic pontine glioma cells (DIPG) in response to BMI1 inhibition. We al...
ORGANISM(S): Homo sapiens 
2020-10-22 | GSE140768 | GEO
GenomicsGenome-wide mapping of RNA Pol III binding site (K562)
We report the results of chromatin immunoprecipitation following by high-thoughput tag sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase III in K562 cells. We have also generated a sequenced input DNA datasets for K562 cells. For data usage terms and condition...
ORGANISM(S): Homo sapiens 
2009-12-31 | GSE19548 | GEO
GenomicsGenome-wide mapping of RNA Pol II binding site (GM12878)
We report the results of chromatin immunoprecipitation following by high-thoughput sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase II in GM12878 cells. We have also generated a sequenced input DNA datasets for GM12878 cells. For data usage terms and conditio...
ORGANISM(S): Homo sapiens 
2009-12-31 | GSE19550 | GEO
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