Hill E E - OmicsDI

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Unknown (12033)
Transcriptomics (221)
Genomics (158)
Proteomics (93)
Metabolomics (55)
Models (19)
Genomic (5)
Other (3)
Multiomics (1)

Organisms

Homo sapiens (140)
Caenorhabditis elegans (71)
Mus musculus (43)
Arabidopsis thaliana (12)
Bos taurus (6)
Drosophila melanogaster (5)
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Daphnia magna (3)
Enterococcus faecium (3)
Felis catus (2)
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Mammalia (2)
Mesocricetus auratus (2)
synthetic construct (2)
Pseudomonas aeruginosa (2)
Danio rerio (2)
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uncultured organism (1)
Shewanella oneidensis MR-1 (1)
Pimephales promelas (1)
Spea bombifrons (1)
Neisseria gonorrhoeae (1)
Synechocystis sp. PCC 6803 (1)

Organisms

Mus musculus (15)
Homo sapiens (10)
Drosophila melanogaster (2)
Escherichia coli (2)
Arabidopsis thaliana (2)
Lacticaseibacillus paracasei (1)
Mycolicibacterium smegmatis (1)
Caenorhabditis elegans (1)
Oryza sativa (1)

Repository

biostudies-arrayexpress (296)
pride (66)
ENA (53)
EGA (29)
GNPS (29)
MassIVE (26)
MetaboLights (25)
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dbGaP (5)
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geo (2)
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Tissue

Cell culture (16)
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Blood cell (2)
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Blood serum (2)
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Blood (1)
Blood platelet (1)
Breast (1)
Colon (1)
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Disease

Breast cancer (5)
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Not Available (1)
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Barrett's esophagus (1)
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Skin cancer (1)

Technology Type

Mass Spectrometry (67)
Shotgun proteomics (34)
Mass spectrometry (21)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (10)
Data-dependent acquisition (9)
Illumina 15K (8)
Top-down proteomics (6)
NMR spectroscopy (2)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (2)
HDMSE (2)
SRM/MRM (2)
SWATH MS (2)
Illumina HiSeq 2500 (1)
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EI (1)
All-ion fragmentation (1)
MSE (1)

Instrument Platform

LTQ Orbitrap Velos (22)
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Q Exactive (11)
GC-MS (10)
Orbitrap Fusion Lumos (8)
Illumina HiSeq 2000 (5)
Illumina NovaSeq 6000 (4)
5975C Series GC/MSD (Agilent) (3)
MS Imaging - (3)
Liquid Chromatography MS - positive - reverse phase (3)
Axon GenePix 4000B scanning hardware (2)
NextSeq 550 (2)
NextSeq 500 (2)
In-house built IMS-MS with Agilent TOF MS (2)
Q Exactive HF-X (2)
10X chemistry 3' v3 (1)
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BioRad SureCell (1)
Unspecified (1)
428 [Affymetrix] (1)
G2565AA DNA microarray scanner [Agilent] (1)
418 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
Agilent GC-MS (1)
Instrument (1)
7T solariX FT-ICR (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion ETD (1)

Publication Date

2013 (93)
2010 (33)
2015 (30)
2019 (25)
2011 (25)
2014 (24)
2021 (24)
2012 (24)
2017 (23)
2018 (21)
2023 (20)
2025 (19)
2024 (17)
2020 (17)
2005 (14)
2008 (13)
2016 (12)
2022 (12)
2007 (9)
2026 (6)
2009 (4)
2004 (1)

UNIPROT ID/AC

Q9TW49 (1)
Q9VMS4 (1)
Q59E16 (1)
O61734 (1)
O61735 (1)
Q90W58 (1)
P26696 (1)
Q05116 (1)
P12965 (1)
P07663 (1)

CHEBI ID

CHEBI:28044 (9)
CHEBI:18186 (8)
CHEBI:26271 (8)
CHEBI:18237 (8)
CHEBI:15428 (8)
CHEBI:29016 (8)
CHEBI:15354 (8)
CHEBI:17234 (7)
CHEBI:27266 (7)
CHEBI:25094 (7)
CHEBI:27570 (7)
CHEBI:15996 (3)
CHEBI:17552 (3)
CHEBI:16526 (2)
CHEBI:17835 (2)
CHEBI:17794 (2)
CHEBI:17665 (2)
CHEBI:16236 (2)
CHEBI:15343 (2)
CHEBI:15361 (2)
CHEBI:18021 (2)
CHEBI:16908 (2)
CHEBI:16001 (2)
CHEBI:15846 (2)
CHEBI:16761 (2)
CHEBI:15422 (2)
CHEBI:35224 (1)
CHEBI:16541 (1)
CHEBI:33699 (1)
CHEBI:18367 (1)

Metabolite Name

Valine (5)
Tyrosine (5)
Phenylalanine (5)
Arginine (5)
Glutamine (5)
Cholesterol (4)
Glycerol (4)
L-tyrosine (4)
L-glutamine (4)
Alanine (4)
Leucine (4)
Methionine (4)
Histidine (4)
Arginine (4)
Lysine (4)
Tyrosine (4)
Taurine (4)
Proline (4)
Lysine (4)
Histidine (4)
Glycine (4)
Choline (4)
Adenosine (4)
Glycine (4)
Threonine (4)
Proline (4)
Phenylalanine (4)
Isoleucine (4)
Glucose (4)
Creatine (4)

First Public Date

2014 (10)
2021 (8)
2024 (7)
2019 (5)
2026 (4)
2025 (4)
2020 (3)
2017 (3)
2013 (3)
2023 (2)
2018 (2)
2022 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (15)
Constraint-based model (2)
Delayed differential equation model (1)

Lab affiliation

Proteomics facility, Central Science Laboratory, University of Tasmania (3)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
UCSF (2)
UNC - Chapel Hill (2)
University of North Carolina at Chapel Hill (2)
1. Victor Chang Cardiac Research Institute, Darlinghurst, NSW, 2010 2. St Vincent’s Hospital, Darlinghurst, NSW, 2010 3. University of New South Wales Sydney, Kensington, NSW, 2052 (1)
Agriculture and Agri-Food Canada, Canada (1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre. (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Biochemistry and Molecular Genetics (1)
Boston College Biology Department, Chestnut Hill, Massachusetts, USA (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid. (1)
Chief Scientific Officer, Sangui Bio (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biomedical Science Centre for Membrane Interactions and Dynamics (CMIAD) Firth Court, Western Bank The University of Sheffield Sheffield S10 2TN United Kingdom (1)
Department of Chemistry Center for Gastrointestinal Biology and Disease Integrated Program for Biological and Genome Sciences University of North Carolina at Chapel Hill (1)
Department of Chemistry, Univeristy of North Carolina at Chapel Hill (1)
Department of Chemistry, Boston College, Chestnut Hill, MA (1)
Department of Chemistry, Univeristy of North Carolina at Chapel Hill (1)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Department of Chemistry, University of North Carolina at Chapel Hill, NC, USA (1)
Department of Environmental Sciences and Engineering, Gilling's School of Global Public Health, Univeristy of North Carolina at Chapel Hill (1)
Department of Medical Genetics, Cambridge Institute for Medical Research, The Keith Peters Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, United Kingdom (1)
Department of Microbiology & Immunology UNC School of Medicine UNC-Chapel Hill (1)
Department of Microbiology and Immunology and Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27599, USA. (1)
Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA (1)
Department of Pathology, University of Cambridge (1)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (1)
Department of Pharmacology, Lineberger Comprehensive Cancer Center, UNC-Chapel Hill (1)
Department of Surgery Hollings Cancer Center (HO 512H) Medical University of South Carolina (1)

IsPrivate

False (19)

Model Flag

Non Kinetic (2)
Non Miriam (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (148)
ChIP-seq (76)
RNA-seq of coding RNA (32)
Methylation profiling by array (11)
RNA-seq of coding RNA from single cells (5)
Unknown experiment type (3)
High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Other (3)
RNA-seq of non coding RNA (3)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Plant - High-throughput sequencing (1)
Genotyping by array (1)
Ribo-seq (1)
MicroRNA profiling by array (1)

Release Date

2021 (1253)
2023 (1186)
2025 (1179)
2022 (1171)
2024 (1127)
2020 (893)
2019 (862)
2018 (696)
2017 (611)
2016 (560)
2015 (509)
2014 (474)
2013 (409)
2012 (321)
2011 (230)
2010 (207)
2026 (181)
2009 (146)
2008 (118)
2007 (55)
2006 (37)
2005 (25)
2002 (18)
2001 (15)
2004 (13)
2003 (9)
1999 (7)
1998 (7)
2000 (6)
1997 (2)

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Multiyear dynamics of recent and legacy contaminants in a German hill-slope catchment (MS2 data)

Anthropogenic activities cause the release of vast amounts of contaminants into the environment and thus also into surface- and groundwaters. Regulatory monitoring determines whether critical threshold concentrations are surpassed, by mostly occasional probing. This irregular testing, however, do...

2024-06-04 | MTBLS3533 | MetaboLights

Multiyear dynamics of recent and legacy contaminants in a German hill-slope catchment (MS1 data)

2024-06-04 | MTBLS8433 | MetaboLights

Transcription profiling of human dendritic cells matured by cadherin reveals disruption of E-cadherin-mediated adhesion induces a functionally distinct pathway of dendritic cell maturation

The maturation of dendritic cells (DCs) after exposure to microbial products or inflammatory mediators plays a critical role in initiating the immune response. We found that maturation can also occur under steady state conditions, triggered by alterations in E-cadherin-mediated DC-DC adhesion. Sele...

ORGANISM(S): Homo sapiens

2008-06-16 | E-GEOD-9241 | biostudies-arrayexpress

Development and formative evaluation of the e-Health Implementation Toolkit (e-HIT).

Not available

S-EPMC2967499 | biostudies-literature

E. coli SHAPE-MaP

SHAPE-MaP probing of RNA structures in E. coli cells

PRJEB23974 | ENA

Metabolic response to point mutations reveals principles of modulation of in vivo enzyme activity and phenotype

The relationship between sequence variation and phenotype is poorly understood. Here, we use metabolomic analysis to elucidate the molecular mechanism underlying the filamentous phenotype of E. coli strains that carry destabilizing mutations in dihydrofolate reductase (DHFR). We find that partial lo...

2021-06-30 | MTBLS2795 | MetaboLights

E-Synthesis: A Bayesian Framework for Causal Assessment in Pharmacosurveillance.

Not available

S-EPMC6929659 | biostudies-literature

Systematic identification of metabolites controlling gene expression in E. coli

PRJNA545520 | ENA

National Youth tobacco surveys (2014-2019) show increasing beliefs in the harm and relative addiction of e-cigarettes but decreasing associations between those beliefs and e-cigarette use.

Not available

S-EPMC10330167 | biostudies-literature

Epidemiology of thalassemia among the hill tribe population in Thailand.

Not available

S-EPMC7877639 | biostudies-literature