Hoffman R R - OmicsDI

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Unknown (1982)
Transcriptomics (96)
Proteomics (34)
Genomics (20)
Metabolomics (12)
Models (1)

Organisms

Homo sapiens (81)
Mus musculus (22)
Saccharomyces cerevisiae (20)
Rattus norvegicus (10)
Apis mellifera (4)
prokaryotic environmental samples (3)
Bos taurus (1)
Caenorhabditis elegans (1)
Plasmodium falciparum (1)
Triticum aestivum (1)
Plasmodium falciparum 7G8 (1)
Candida albicans (1)
Drosophila melanogaster (1)
Cystoisospora suis (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (96)
pride (30)
EGA (17)
MetaboLights (10)
GNPS (2)
MassIVE (2)
PeptideAtlas (2)
ENA (2)
BioModels (1)
geo (1)

Tissue

Cell culture (4)
Epithelial cell (3)
Others (2)
Lung (2)
Skeletal muscle (2)
T cell (2)
Adipose tissue (1)
Blood (1)
Blood cell (1)
Brain (1)
Cell suspension culture (1)
Embryonic stem cell (1)
Epididymal white adipose tissue (1)
Fat cell (1)
Leg muscle (1)
Paneth cell of epithelium of small intestine (1)
Small intestine (1)
White adipose tissue (1)

Disease

Non-small cell lung carcinoma (2)
Mild cystic fibrosis, pulmonary disease (1)
Mild asthma (1)
Normal (1)
Bacterial infectious disease (1)
Cervix carcinoma (1)
Insulin insensitivity (1)
Neurodevelopmental delay (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (15)
Mass spectrometry (9)
Bottom-up proteomics (8)
Data-dependent acquisition (7)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
Gel-based experiment (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
NextSeq 500 (5)
Axon GenePix 4000B scanning hardware (4)
Illumina NovaSeq 6000 (3)
MA900, Sony (2)
10x Chromium Controller (2)
Orbitrap Fusion Lumos (2)
LTQ Orbitrap Velos (2)
Illumina NovaSeq X (1)
DNBSEQ-G400 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ FT (1)
MaXis (1)
Q Exactive (1)
Flame ionisation detector MS - (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2010 (17)
2007 (15)
2023 (13)
2015 (12)
2014 (10)
2022 (7)
2025 (7)
2024 (6)
2026 (6)
2021 (6)
2016 (6)
2008 (6)
2017 (5)
2009 (5)
2013 (4)
2012 (4)
2011 (4)
2019 (3)
2018 (3)
2005 (2)
2004 (2)
2006 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A0A0MR66 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0MZ66 (2)
A1L170 (2)
A1X283 (2)
A3KN83 (2)
A5A3E0 (2)
A5YM69 (2)
A6NFI3 (2)
A6NMQ1 (2)
A7E2V4 (2)
A8CG34 (2)
A8MQ03 (2)
A9IYQ1 (2)
B3KML9 (2)
B4DKM5 (2)
B4DPR2 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B4E3H1 (2)
B5MBZ0 (2)
B5MCI0 (2)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15741 (2)
CHEBI:16010 (2)
CHEBI:16196 (2)
CHEBI:173703 (2)
CHEBI:18012 (2)
CHEBI:18257 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:32816 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

First Public Date

2019 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Cornell University Department of Microbiology (3)
Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (2)
Moffitt Cancer Center (2)
The University of Sydney (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Associate Professor of Biochemistry Schulich School of Medicine and Dentistry Scientist, Children’s Health Research Institute (CHRI) Medical Sciences Building 358 Western University London, Ontario N6A 5C1, Canada (1)
Biomedical Center, LMU Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried Phone: (089) 2180 75420 (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario N6A 5C1 (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Chemistry, Vanderbilt University (1)
IRIC-Université de Montréal (1)
James McGill Professor of Neurology and Neurosurgery and Anatomy and Cell Biology Montreal Neurological Institute-Hospital McGill, Montreal CANADA (1)
Laboratory of Genetics, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA. (1)
Novartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland (1)
Principal Investigator | The Ernst and Kaethe Ascher Career Development Chair | The Department of Immunology and Regenerative Biology | Weizmann-UK Building, Room 17 | Weizmann Institute of Science | Rehovot 76100, ISRAEL | Tel: +972-8-934-4937 (1)
Robert H. Lurie Comprehensive Cancer Center (1)
Schulich School of Medicine and Dentistry, Biochemistry Department, Western University, Ontario, Canada (1)
The Kinghorn Cancer Center, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia. St. Vincent's Clinical School, Faculty of Medicine, UNSW, Darlinghurst, NSW, Australia (1)
The University of Melbourne (1)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (1)
Weizmann Institute of Science (1)
institute parasitology, University of veterinary medicine vienna, Veterinärplatz 1, 1210 vienna, austria (1)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

Study type

Transcription profiling by array (66)
Comparative genomic hybridization by array (8)
RNA-seq of coding RNA from single cells (7)
RNA-seq of coding RNA (4)
Other (3)
Unknown experiment type (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)
ChIP-chip by array (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2022 (212)
2021 (185)
2020 (167)
2025 (155)
2024 (151)
2023 (150)
2019 (146)
2018 (144)
2015 (113)
2016 (104)
2017 (102)
2014 (93)
2011 (62)
2010 (61)
2012 (55)
2013 (47)
2009 (32)
2008 (27)
2007 (25)
2026 (18)
2006 (7)
2004 (4)
2000 (4)
2005 (3)
2002 (3)
2001 (3)
2003 (2)
1999 (2)
1998 (1)

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Saccharomyces cerevisiae: DSB mapping by Break-chip in a two-color experiment (G1 control vs. S phase samples)

Break-chip (microarray-based double strand break mapping) analysis of mec1 cells recovering from 200 mM hydroxyurea in the presence or absence of 0.8 micromolar bathophenanthroline sulfonate (BPS). We asked if the presence of an iron chelator, BPS, during cell recovery from transient exposure to 200...

ORGANISM(S): Saccharomyces cerevisiae

2015-01-12 | E-GEOD-64446 | biostudies-arrayexpress

Polymer Crystallization: Universal Macroscopic Description via the Autocatalytic Hoffman-Lauritzen Approach.

Not available

S-EPMC12044480 | biostudies-literature

GOES-R land surface products at Western Hemisphere eddy covariance tower locations.

Not available

S-EPMC10920807 | biostudies-literature

Assessing Perceived Barriers to Meditation: the Determinants of Meditation Practice Inventory-Revised (DMPI-R).

Not available

S-EPMC7929263 | biostudies-literature

The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations.

Not available

S-EPMC4176155 | biostudies-literature

regentrans: a framework and R package for using genomics to study regional pathogen transmission.

Not available

S-EPMC8914358 | biostudies-literature

Comparative profiling in 13 muscle disease groups

Summary: Genetic disorders of muscle cause muscular dystrophy, and are some of the most common inborn errors of metabolism. Muscle also rapidly remodels in response to training and innervation. Muscle weakness and wasting is important in such conditions as aging, critical care medicine, space flig...

ORGANISM(S): Homo sapiens

2005-10-14 | E-GEOD-3307 | biostudies-arrayexpress

Tumor-Targeting Salmonella typhimurium A1-R Arrests a Chemo-Resistant Patient Soft-Tissue Sarcoma in Nude Mice.

Not available

S-EPMC4523197 | biostudies-literature

Comparison of the selective targeting efficacy of Salmonella typhimurium A1-R and VNP20009 on the Lewis lung carcinoma in nude mice.

Not available

S-EPMC4546492 | biostudies-literature

Efficacy of Tumor-Targeting Salmonella A1-R on a Melanoma Patient-Derived Orthotopic Xenograft (PDOX) Nude-Mouse Model.

Not available

S-EPMC4976963 | biostudies-literature