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ProteomicsLactate racemase proteins MALDI TOF/TOF
This project reports the characterization of the lactate racemase system in Lactobacillus plantarum. The lactate racemase (LarA) is a nickel-dependent enzyme. The apo-enzyme (apoLarA) is activated by a single nickel-containing maturation protein (LarE) that requires preactivation by two other access...
ORGANISM(S): Lactobacillus plantarum 
2014-04-02 | PXD000775 | Pride
Lactate racemase Lactobacillus plantarum Nickel enzyme Maturation proteins 
ModelsPastick2009 - Genome-scale metabolic network of Streptococcus thermophilus (iMP429)
Pastick2009 - Genome-scale metabolic network of Streptococcus thermophilus (iMP429) This model is described in the article: Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria. Pastink MI, Teusink B, Hols P, Visser S, de...
2015-07-30 | MODEL1507180063 | BioModels
TranscriptomicsIdentification of genes regulated by L-lactate and by DL-lactate in Lactobacillus plantarum
L. plantarum is known to possess an L-lactate inducible lactate racemase activity (Goffin et al. 2005. J. Bacteriol. 187:6750). In the present study, microarrays were used in order to identify all genes that are up-regulated by L-lactate, but not by a racemic mixture of D- and L-lactate. A mutant of...
ORGANISM(S): Lactobacillus plantarum 
2013-07-01 | E-GEOD-43518 | biostudies-arrayexpress
TranscriptomicsWT vs KO comX comparison
Transcriptional profiling of S. thermophilus LMD-9 wild-type compared to the isogenic mutant strain CB003 (deletion of comX, STER_0189) for the identification of the ComX regulon. Cells were grown in CDM medium supplemented with lactose 1% (CDML) and sampled at OD600 = 0.4 for mRNA extraction wild-t...
ORGANISM(S): Streptococcus thermophilus 
2012-01-31 | E-GEOD-28372 | biostudies-arrayexpress
TranscriptomicsKO comR vs. KO comX comparison
Transcriptional profiling of mutant Streptococcus thermophilus LMD-9 comR::lox72 (strain LF148) compared to mutant S. thermophilus LMD-9 DcomX (strain CB003) for the identification of the ComR regulon. Cells were grown in CDM medium supplemented with lactose 1% (CDML) and sampled at OD600 = 0.3~0.4 ...
ORGANISM(S): Streptococcus thermophilus 
2014-02-15 | E-GEOD-35849 | biostudies-arrayexpress
TranscriptomicsWT vs KO mecA comparison
Transcriptional profiling of S. thermophilus LMD-9 wild-type compared to the isogenic mutant strain CB052 (deletion of mecA, STER_0216) for the identification of the MecA regulon. Cells were grown in THB medium supplemented with glucose 1% (THBG) and sampled at OD600 = 0.4 for mRNA extraction wild-t...
ORGANISM(S): Streptococcus thermophilus 
2012-01-31 | E-GEOD-28371 | biostudies-arrayexpress
TranscriptomicsWT vs WTmitomycinC comparison
Transcriptional profiling of S. thermophilus LMD-9 wild-type in the presence of mitomycin C. Cells were grown in CDM medium supplemented with lactose 1% (CDML), without or with mitomycin C 0.08 microg/ml, and sampled at OD600 = 0.4 for mRNA extraction. wild-type vs wild-type + mitomycin C, 2 WT bio...
ORGANISM(S): Streptococcus thermophilus 
2013-01-31 | E-GEOD-35518 | biostudies-arrayexpress
TranscriptomicsWT vs KO hdiR comparison
Transcriptional profiling of S. thermophilus LMD-9 wild-type compared to the isogenic mutant strain CB0082 (deletion of hdiR, STER_0918) for the identification of the HdiR regulon. Cells were grown in CDM medium supplemented with lactose 1% (CDML) and sampled at OD600 = 0.4 for mRNA extraction wild-...
ORGANISM(S): Streptococcus thermophilus 
2013-01-31 | E-GEOD-35517 | biostudies-arrayexpress
TranscriptomicsLactococcus lactis MG1363 â??guaA versus L. lactis MG1363 (wt)
Gene expression in Lactococcus lactis MG1363 was compared to that of L. lactis MG1363 â??guaA in rich GM17 medium. One condition design comparison of two strains
ORGANISM(S): Lactococcus lactis 
2016-01-12 | E-GEOD-76764 | biostudies-arrayexpress
TranscriptomicsTranscriptomic study of the impact of iron toxicity on rice plant
transcriptomic study of the impact of iron toxicity on rice plant (Oryza sativa L.; cv M-bM-^@M-^XI Kong PaoM-bM-^@M-^Y ) after short term (3 days) or long term (3 weeks) exposure to ferrous iron (125 ppm). Twenty five days old rice seedlings were exposed to 0 or 125 mg/L ferrous iron for 3 days and...
ORGANISM(S): Oryza sativa 
2012-05-14 | E-GEOD-36299 | biostudies-arrayexpress
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