Hope K K - OmicsDI

Show results for

Unknown (4173)
Transcriptomics (37)
Proteomics (32)
Genomics (13)
Metabolomics (4)
Models (2)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (30)
Mus musculus (15)
Arabidopsis thaliana (5)
Oryza sativa (2)
Yarrowia lipolytica (1)
Ovis aries (1)
Drosophila melanogaster (1)
Danio rerio (1)
Rattus norvegicus (1)
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (1)
Pseudomonas aeruginosa PAO1 (1)
288671 (1)
Aspergillus aculeatus ATCC 16872 (1)
Aspergillus brasiliensis (1)
Aspergillus carbonarius ITEM 5010 (1)
Aspergillus fumigatus Af293 (1)
Aspergillus nidulans FGSC A4 (1)
Aspergillus niger (1)
Aspergillus sydowii (1)
Aspergillus tubingensis (1)
Aspergillus versicolor (1)
Aspergillus wentii (1)
Bacillus pumilus SAFR-032 (1)
Bombus terrestris (1)
Knufia petricola (1)
Penicilliopsis zonata (1)
Pyrococcus furiosus (1)

Organisms

Mus musculus (2)
unidentified (1)
Drosophila melanogaster (1)
Homo sapiens (1)
Danio rerio (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (36)
pride (25)
ENA (10)
MassIVE (5)
MetaboLights (4)
EGA (2)
geo (2)
iProX (2)
BioModels (1)
Cell Collective (1)
jPOST (1)

Tissue

Cell culture (5)
Neutrophil (4)
Blood (3)
Vegetative cell (sensu Fungi) (3)
B cell (2)
Ankle joint (1)
Articular cartilage (1)
Blood serum (1)
Bone (1)
Embryo (1)
Epithelial cell (1)
Fungal cell (1)
Hemolymph (1)
Liver (1)
Mycelium (1)
Natural killer cell (1)
Pancreatic islet cell (1)
Plant cell (1)
Plant embryo (1)
Vegetative cell (1)

Disease

Acute leukemia (2)
Huntington's disease mouse model (1)
Cancer (1)
Bacterial infectious disease (1)
Glioblastoma (1)
Lymphoma (1)
Osteoarthritis (1)
Rheumatoid arthritis (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (17)
Mass spectrometry (4)
Data-independent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Data-dependent acquisition (2)
Illumina Genome Analyzer II (1)
Gel-based experiment (1)

Instrument Platform

Q Exactive (3)
RiboZ (1)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (1)
DASGIP bioreactors (1)
Ion Torrent Proton (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
MS:1000031 (1)
Orbitrap Exploris 480 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - direct infusion (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - direct infusion (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2022 (10)
2021 (9)
2016 (6)
2013 (5)
2011 (5)
2019 (5)
2018 (3)
2015 (3)
2008 (3)
2025 (3)
2020 (3)
2017 (2)
2012 (2)
2010 (2)
2007 (2)
2006 (2)
2024 (2)
2023 (2)
2026 (2)
2014 (1)
2004 (1)
2003 (1)
2002 (1)
2005 (1)

CHEBI ID

CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:15756 (4)
CHEBI:16335 (4)
CHEBI:16865 (4)
CHEBI:17754 (4)
CHEBI:30769 (4)
CHEBI:32816 (4)
CHEBI:15354 (3)
CHEBI:15611 (3)
CHEBI:15721 (3)
CHEBI:15753 (3)
CHEBI:16010 (3)
CHEBI:16015 (3)
CHEBI:16108 (3)
CHEBI:16196 (3)
CHEBI:16264 (3)
CHEBI:16449 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16737 (3)
CHEBI:16750 (3)
CHEBI:16811 (3)
CHEBI:16856 (3)
CHEBI:16958 (3)
CHEBI:17084 (3)
CHEBI:17196 (3)
CHEBI:17202 (3)
CHEBI:17239 (3)
CHEBI:17345 (3)

Metabolite Name

Adenosine (2)
CDP (2)
Carnitine (2)
Citric acid (2)
Citrulline (2)
Fumaric acid (2)
Gamma-aminobutyric acid (2)
Glycerol (2)
Glycine (2)
Hypoxanthine (2)
IMP (2)
Inosine (2)
L-asparagine (2)
N,N-dimethylglycine (2)
Sarcosine (2)
Succinic acid (2)
(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(N(omega)-L-arginino)succinic acid (1)
(R)-3-(4-hydroxyphenyl)lactic acid (1)
1 monoolein (1)
1,2,4,5-tetramethylbenzene (1)
1,4-dideoxy-1,4-imino-D-arabinitol (1)
1-hydroxy-2-naphthoic acid (1)
1-methyl-L-tryptophan (1)
1-methylhydantoin (1)
1-octadecene (1)
1-octen-3-ol (1)
12a-Hydroxy-9-Demethylmunduserone-8-Carboxylic Acid (1)
2'-deoxyadenosine 5'-monophosphate (1)
2'-deoxycytidine (1)

IsPrivate

False (1)

First Public Date

2014 (2)
2026 (1)
2024 (1)
2021 (1)
2020 (1)
2019 (1)
2018 (1)
2017 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (27)
Methylation profiling by array (3)
RNA-seq of coding RNA (2)
Baseline (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (538)
2023 (504)
2021 (492)
2025 (428)
2024 (419)
2020 (358)
2019 (267)
2018 (253)
2017 (194)
2016 (165)
2015 (118)
2014 (96)
2013 (74)
2012 (72)
2011 (67)
2026 (53)
2010 (33)
2008 (23)
2009 (21)
2007 (13)
2002 (7)
2005 (4)
2006 (3)
2004 (3)
2000 (2)
2003 (1)
1999 (1)

Lab affiliation

Beckman Research Institute of City of Hope (3)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK. (2)
Beckman Research Institute of the City of Hope (1)
CR University Grenoble Alpes, Institute for Biosciences, Inserm U1209, CNRS UMR 5309, 38000 Grenoble, France. (1)
Cancer & Cell Biology Division, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, Edinburgh, UK (1)
Clinical Sciences, Lund University, Sweden (1)
College of Life Sciences, Hunan Normal University (1)
College of Life Sciences, Hunan Normal University, Changsha 410081, China (1)
Department of Biotechnology, University of Natural Resources and Life Sciences, BOKU, Vienna, Austria (1)
Department of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Medical Center, Duarte, CA 91010, USA (1)
Department of Rheumatology and immunology, Second Xiangya Hospital of Central South University, No.139 Ren Min Middle Road (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, CA, USA (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, Monrovia, CA, USA (1)
Departments of Pediatrics and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte CA 91010 (1)
EDyP (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University The Netherlands (1)
Institute of Molecular Medicine and Cell Research, University of Freiburg, Germany (1)
Personal Chair of Cancer Network Biology, Centre for Cancer Research, Institute of Genetics and Cancer, The University of Edinburgh (1)
School of Clinical Medicine, Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. Ningxia Human Stem Cell Institute, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. (1)
University of Vienna (1)

4262 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

IsPrivate

First Public Date

Modelling Approach

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets